| Protein: | nhr-25 |
| Organism: | Caenorhabditis elegans |
| Length: | 492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-25.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..45] | [465..110] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MGMKMEAVRA DRMRGGRNKF GSFYKKDRAH RMQRNAMRVS TVQVPAVLGA QSQAQTFYQP 60
61 PEHQVSSSTT DQNNQINYFD QTKIKTEYIK TEYDAHLQSP TLSSSTNQQL SVSDFIMRPG 120
121 YLVDPQDSLA VLLGS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-215] |
1 11 21 31 41 51
| | | | | |
1 TIDDPLLRHT FPAAYQLNEV KQEPFDYSEQ FIHHSLHDYP TYTSNTTNYA TMMPMTTVSS 60
61 TQSLVTSTSS TTTGRMTEAS
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 1ynwB |
| Description: | Crystal Structure of Vitmain D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [216-492] |
1 11 21 31 41 51
| | | | | |
1 STSPILPLCP APTEKTVDHF YNSSIAEMCK TLPDDAQIAR IFTSVKGTSK PEKHAFSIQV 60
61 AEENLKDIVI WAKNDQLFSK LSLDDQMILL QTSWTTVHIV DITNAMVHGN LLSQYKMSNG 120
121 DEVPVGLVAL LGNQTFVSSW NDVVIRLRNM GFTNFDYCAF RFLALFDQSM DSFPAVSTAR 180
181 SRVLQSWREV RCTTAFLEIF EQIRRLAYDS LRYLWNLHSN CPTNWEQFFP EASLVLEMIR 240
241 TTVNRSASSS VTAITQVPAI QLPTPQATYT AVPYMAS
|
| Detection Method: | |
| Confidence: | 54.09691 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.31508164334985 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02157665604796 | bayes_pls_golite062009 |
| DNA binding | 1.47175550190876 | bayes_pls_golite062009 |
| signal transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| molecular transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| protein binding | 1.34648900580465 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29377568150934 | bayes_pls_golite062009 |
| receptor activity | 1.17902442273252 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.16718542519809 | bayes_pls_golite062009 |
| transcription activator activity | 0.96843436755116 | bayes_pls_golite062009 |
| transcription factor activity | 0.92060883178562 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.67007540744134 | bayes_pls_golite062009 |
