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View Structure Prediction Details

Protein: coh-3
Organism: Caenorhabditis elegans
Length: 607 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coh-3.

Description E-value Query
Range
Subject
Range
coh-4 - status:Partially_confirmed UniProt:Q95XJ4 protein_id:AAK84607.1
1033.0 [0..1] [607..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVISIDVPLK ASEEATVKFL LGIVFGSHKK LGLQSNRREC FRHDVLQASK LIQWILSNER  60
   61 KNRRSLSIAC NLVYGNTIVL STQVARLLQD AIRAREIVAF TSYLAEEDER KRKTREQMEG 120
  121 DNSKTPKKKR RTMVEEFPLT PTPISVALKQ NITMPDVLSL HKNDQINVED DLAAPTMEQL 180
  181 EMMYGMLESE NR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTAIDLTFID RYSSNDCRQN VHNLNLETDF QRPSDDFIRS QLMTPTKSIP QEEEFQPATH  60
   61 LKEMLLFRQL PITLDETERR RSMEEEMEEA RNSGINTEFI PPQQMDVPRL VSENMDLDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVSIPIRIPK VPLSATKKQT SENEGAEEGI NYKIPLREMH HIMEDYSSLH FKDPEPLYRK  60
   61 TSKVMNLKEL LNPIPYFLRK GCNTDMWDLF KVKTRKFDST IGHDVSDTEE EDEDEETERR 120
  121 NRLKAELEPL ETIDLSQMKF MTTPLKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [459-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSPILTPVHR PEEIEFREEL ELPRFEQFEP MNVNPISPKM EEPALFEDNW NSKPTWSNTS  60
   61 SENIADALTI RGNIIRQLDD KSPFEVTLDS MIPVAATSRR EAARTFYTVL ELLKERKIKA 120
  121 TQRAPYENID LLLSTDDSED IDDLAMADF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.53
Match: 1w1wE
Description: Sc Smc1hd:Scc1-C complex, ATPgS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.683379929086364 bayes_pls_golite062009
transcription regulator activity 0.16959343932447 bayes_pls_golite062009
nucleic acid binding 0.0949481158963694 bayes_pls_golite062009
DNA binding 0.00746597740509714 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle