Protein: | nhr-34 |
Organism: | Caenorhabditis elegans |
Length: | 631 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Region A: Residues: [1-140] |
1 11 21 31 41 51 | | | | | | 1 MTDYCIFNIS WMSDRFGCET GNEDVQECID KSPNGSPTTS TTHRRQNSSS GLEPARKRPK 60 61 LSPPVLTAMP LDLTDAVSPN ESQACTSSLK GVVTAAGAAQ MSVADRMTSS SVAPPLCIVP 120 121 RSVEFINPKT EDMSMDIPMG |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [141-272] |
1 11 21 31 41 51 | | | | | | 1 NVQSEFTGLK CRVCGDSRAG RHYGTIACNG CKGFFRRSIW EQRDYVCRFG GKCLVVQEYR 60 61 NRCRACRLRK CFTVGMDARA VQSERDKHKK NPKDSNNEGS TSPQYPTAST PISIPSTSTS 120 121 QTPTSSVNSY NF |
Detection Method: | |
Confidence: | 26.39794 |
Match: | 2a66A |
Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [273-631] |
1 11 21 31 41 51 | | | | | | 1 QNIPGIVSRS FSENLIMRDN SVPVMETSQS AALSHVPLVR YLIDLEKATD NLIDENCDFM 60 61 SMEFDQLCRV DVTIEAAFRQ PGVVAKRTPP RWLALERLTT LEDVHIAWCR SFVLCIDYAK 120 121 IMKDYQELSP TDQFTLLRNR VISVNWLCHT YKTFKAGCDG VALVNGSWYP RDKELQKQLD 180 181 PGCNHYFRIL SEHLMEDLVI PMREMDMDEG EFVILKALIL FRAHRRLSEE GRAHIKRVRD 240 241 KYIEALYQHV QHQHRHFSSV QTSMRISKIL LLLPSIEHLS QQEDDNVQFL ALFNLANLNG 300 301 LPYELHSSIK QHIPNGDDSD DTQVNEVTSN NDGPRSSESS HTPQSVSTSQ FLEFKPSLH |
Detection Method: | |
Confidence: | 56.154902 |
Match: | 1xdkB |
Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
vitamin D3 receptor activity | 5.5563493713822 | bayes_pls_golite062009 |
transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
steroid hormone receptor activity | 4.81441024181511 | bayes_pls_golite062009 |
nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
ecdysteroid hormone receptor activity | 4.66615836207965 | bayes_pls_golite062009 |
transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
nuclear hormone receptor binding | 3.91470119037087 | bayes_pls_golite062009 |
ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
binding | 3.85318710398432 | bayes_pls_golite062009 |
transcription repressor activity | 3.83878598697109 | bayes_pls_golite062009 |
hormone receptor binding | 3.79647267365529 | bayes_pls_golite062009 |
protein binding | 3.21524787168952 | bayes_pls_golite062009 |
transcription activator activity | 3.20381581407476 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.01488410150634 | bayes_pls_golite062009 |
transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
receptor activity | 2.62895787183554 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
vitamin D binding | 2.05947211013242 | bayes_pls_golite062009 |
molecular transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
signal transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
retinoic acid receptor binding | 1.59968001933699 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.56146647486761 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.48246587604476 | bayes_pls_golite062009 |
estrogen receptor activity | 1.47290778095383 | bayes_pls_golite062009 |
retinoid X receptor binding | 1.45560845709347 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
transcription coactivator activity | 1.23834725221597 | bayes_pls_golite062009 |
promoter binding | 1.16363620574097 | bayes_pls_golite062009 |
transcription corepressor activity | 0.995333369475571 | bayes_pls_golite062009 |
juvenile hormone binding | 0.814202236506491 | bayes_pls_golite062009 |
protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
steroid hormone receptor binding | 0.754240851368212 | bayes_pls_golite062009 |
protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
lipid binding | 0.164046651023989 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
estrogen response element binding | 4.73336420190096E-4 | bayes_pls_golite062009 |