Protein: | nhr-34 |
Organism: | Caenorhabditis elegans |
Length: | 613 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Region A: Residues: [1-121] |
1 11 21 31 41 51 | | | | | | 1 MMDDLHQQLH QNYNPNGSPT TSTTHRRQNS SSGLEPARKR PKLSPPVLTA MPLDLTDAVS 60 61 PNESQACTSS LKGVVTAAGA AQMSVADRMT SSSVAPPLCI VPRSVEFINP KTEDMSMDIP 120 121 M |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [122-230] |
1 11 21 31 41 51 | | | | | | 1 GNVQSEFTGL KCRVCGDSRA GRHYGTIACN GCKGFFRRSI WEQRDYVCRF GGKCLVVQEY 60 61 RNRCRACRLR KCFTVGMDAR AVQSERDKHK KNPKDSNNEG STSPQYPTA |
Detection Method: | |
Confidence: | 26.69897 |
Match: | 2a66A |
Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [231-613] |
1 11 21 31 41 51 | | | | | | 1 STPISIPSTS TSQTPTSSVN SYNFQNIPGI VSRSFSENLI MRDNSVPVME TSQSAALSHV 60 61 PLVRYLIDLE KATDNLIDEN CDFMSMEFDQ LCRVDVTIEA AFRQPGVVAK RTPPRWLALE 120 121 RLTTLEDVHI AWCRSFVLCI DYAKIMKDYQ ELSPTDQFTL LRNRVISVNW LCHTYKTFKA 180 181 GCDGVALVNG SWYPRDKELQ KQLDPGCNHY FRILSEHLME DLVIPMREMD MDEGEFVILK 240 241 ALILFRAHRR LSEEGRAHIK RVRDKYIEAL YQHVQHQHRH FSSVQTSMRI SKILLLLPSI 300 301 EHLSQQEDDN VQFLALFNLA NLNGLPYELH SSIKQHIPNG DDSDDTQVNE VTSNNDGPRS 360 361 SESSHTPQSV STSQFLEFKP SLH |
Detection Method: | |
Confidence: | 62.39794 |
Match: | 1lbdA |
Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
vitamin D3 receptor activity | 5.5563493713822 | bayes_pls_golite062009 |
transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
steroid hormone receptor activity | 4.81441024181511 | bayes_pls_golite062009 |
nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
ecdysteroid hormone receptor activity | 4.66615836207965 | bayes_pls_golite062009 |
transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
nuclear hormone receptor binding | 3.91470119037087 | bayes_pls_golite062009 |
ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
binding | 3.85318710398432 | bayes_pls_golite062009 |
transcription repressor activity | 3.83878598697109 | bayes_pls_golite062009 |
hormone receptor binding | 3.79647267365529 | bayes_pls_golite062009 |
protein binding | 3.21524787168952 | bayes_pls_golite062009 |
transcription activator activity | 3.20381581407476 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.01488410150634 | bayes_pls_golite062009 |
transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
receptor activity | 2.62895787183554 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
vitamin D binding | 2.05947211013242 | bayes_pls_golite062009 |
molecular transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
signal transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
retinoic acid receptor binding | 1.59968001933699 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.56146647486761 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.48246587604476 | bayes_pls_golite062009 |
estrogen receptor activity | 1.47290778095383 | bayes_pls_golite062009 |
retinoid X receptor binding | 1.45560845709347 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
transcription coactivator activity | 1.23834725221597 | bayes_pls_golite062009 |
promoter binding | 1.16363620574097 | bayes_pls_golite062009 |
transcription corepressor activity | 0.995333369475571 | bayes_pls_golite062009 |
juvenile hormone binding | 0.814202236506491 | bayes_pls_golite062009 |
protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
steroid hormone receptor binding | 0.754240851368212 | bayes_pls_golite062009 |
protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
lipid binding | 0.164046651023989 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
estrogen response element binding | 4.73336420190096E-4 | bayes_pls_golite062009 |