YRC Public Data Repository - Protein Structure Prediction

Protein:	CE35354
Organism:	Caenorhabditis elegans
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35354.

Description	E-value	Query Range	Subject Range
gi\|27543262 - gi\|27543262\|gb\|AAO16419.1\| NADH dehydrogenase subunit 4L [Caenorhabditis elegans]	83.0	[0..1]	[77..1]
gi\|31873490, gi\|... - gi\|31873490\|emb\|CAD10442.2\| NADH dehydrogenase subunit 4L [Necator americanus], gi\|19111760\|ref\|NP_5...	82.0	[0..1]	[77..1]
gi\|19111748 - gi\|19111748\|ref\|NP_579945.2\|ND4L_15956 NADH dehydrogenase subunit 4L [Ancylostoma duodenale] gi\|219873105, gi... - gi\|225622202\|ref\|YP_002725715.1\| NADH dehydrogenase subunit 4 [Ancylostoma caninum], gi\|219873105\|gb...	81.0	[0..1]	[77..1]
NULM_CAEBR, NU4L... - (Q8HEB9) NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3), NADH-ubiquinone oxidoreductase chain ...	81.0	[0..2]	[77..1]
gi\|66269527, gi\|... - gi\|91176187\|ref\|YP_537101.1\| NADH dehydrogenase subunit 4L [Anisakis simplex], gi\|66269527\|gb\|AAY431...	79.0	[0..1]	[77..1]
gi\|116177494, gi... - gi\|116510832\|ref\|YP_817450.1\| NADH dehydrogenase subunit 4L [Heterorhabditis bacteriophora], gi\|1161...	79.0	[0..1]	[77..2]
NU4LM_ASCSU - NADH-ubiquinone oxidoreductase chain 4L OS=Ascaris suum GN=ND4L PE=3 SV=2	77.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFLFVSLFM FIFKWQRLIF ILISLEFMML SLFLKFSYVL GEMMFFYFMC FSVISSILGM  60
   61 VVMVGNMKFF GSDNCIF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.964	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits