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View Structure Prediction Details

Protein: CE35354
Organism: Caenorhabditis elegans
Length: 77 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35354.

Description E-value Query
Range
Subject
Range
gi|27543262 - gi|27543262|gb|AAO16419.1| NADH dehydrogenase subunit 4L [Caenorhabditis elegans]
83.0 [0..1] [77..1]
gi|31873490, gi|... - gi|31873490|emb|CAD10442.2| NADH dehydrogenase subunit 4L [Necator americanus], gi|19111760|ref|NP_5...
82.0 [0..1] [77..1]
gi|19111748 - gi|19111748|ref|NP_579945.2|ND4L_15956 NADH dehydrogenase subunit 4L [Ancylostoma duodenale]
gi|219873105, gi... - gi|225622202|ref|YP_002725715.1| NADH dehydrogenase subunit 4 [Ancylostoma caninum], gi|219873105|gb...
81.0 [0..1] [77..1]
NULM_CAEBR, NU4L... - (Q8HEB9) NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3), NADH-ubiquinone oxidoreductase chain ...
81.0 [0..2] [77..1]
gi|66269527, gi|... - gi|91176187|ref|YP_537101.1| NADH dehydrogenase subunit 4L [Anisakis simplex], gi|66269527|gb|AAY431...
79.0 [0..1] [77..1]
gi|116177494, gi... - gi|116510832|ref|YP_817450.1| NADH dehydrogenase subunit 4L [Heterorhabditis bacteriophora], gi|1161...
79.0 [0..1] [77..2]
NU4LM_ASCSU - NADH-ubiquinone oxidoreductase chain 4L OS=Ascaris suum GN=ND4L PE=3 SV=2
77.0 [0..1] [77..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFLFVSLFM FIFKWQRLIF ILISLEFMML SLFLKFSYVL GEMMFFYFMC FSVISSILGM  60
   61 VVMVGNMKFF GSDNCIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.964 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.964 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.955 a.64.1 Saposin
View Download 0.919 a.7.16 Description not found.
View Download 0.886 f.17.1 F1F0 ATP synthase subunit C
View Download 0.865 a.24.17 Group V grass pollen allergen
View Download 0.865 a.24.17 Group V grass pollen allergen
View Download 0.850 a.16.1 S15/NS1 RNA-binding domain
View Download 0.829 f.17.1 F1F0 ATP synthase subunit C


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle