| Protein: | CE34935 |
| Organism: | Caenorhabditis elegans |
| Length: | 372 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34935.
| Description | E-value | Query Range |
Subject Range |
|
|
167.0 | [0..1] | [372..1] |
|
Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MGRRHRRSKV TRVVNLVKKI IAFFFSHIGL CALVVGYALL GAVIFKAVEG PHEAEIQELV 60
61 KSAREKAVDV VWNATFRVNR LDSKQWKKTV LDEVKRFKTV CMLSIRKGYD GKEYGKQAQW 120
121 TFTGAFLYSL TVITTIGYGN TAAKTYIGKT LTMLYAIIGI PLMLLFLTNI GDVMAKIFRF 180
181 LYAQSIRLKF RLILWHKKRK AAKIRRANSL VSRLTRGHRV KADSSVDSFG LGAG
|
| Detection Method: |  |
| Confidence: | 25.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [235-372] |
1 11 21 31 41 51
| | | | | |
1 ADVEDLLTAR VEMEQLEVRE TAAAQLESMT VPISLVVFTM LGYLGVGTTI FKVWEGWTFL 60
61 ESFYFCFISL TTIGFGDKFP STSVSNTDEA QEKLVITSIY LLFGMALLAM CFNLAQEEVQ 120
121 NKTRWIADKF RSKEDDDD
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1lnqA |
| Description: | Potassium channel-related protein MthK |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| potassium channel activity | 6.80950139957332 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 6.78740036921969 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 6.69340621375858 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 6.55904318827964 | bayes_pls_golite062009 |
| voltage-gated channel activity | 6.55320598344395 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 5.06264960439093 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.86252983188139 | bayes_pls_golite062009 |
| cation channel activity | 4.85749153259346 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.77144021609018 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.3961579058414 | bayes_pls_golite062009 |
| gated channel activity | 4.19619757426613 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 4.13359972196575 | bayes_pls_golite062009 |
| substrate-specific channel activity | 4.09858664479122 | bayes_pls_golite062009 |
| ion channel activity | 3.86720832958006 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 3.7587607940377 | bayes_pls_golite062009 |
| channel activity | 3.7587607940377 | bayes_pls_golite062009 |
| transporter activity | 2.93091397928047 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.82224868778929 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.54207434157938 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.26062383880472 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.26062383880472 | bayes_pls_golite062009 |
