| Protein: | ref-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 302 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ref-2.
| Description | E-value | Query Range |
Subject Range |
|
|
502.0 | [0..3] | [301..2533] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MHSDYYTQSQ GPTVEQQPEW QASVQPYSDP HAYSPSFYMN MSQVPHFLPA QVDPFIYPNT 60
61 LGSYGGDKQV QCLWETNGQV CMHVCQN
|
| Detection Method: |  |
| Confidence: | 4.69897 |
| Match: | 1bboA |
| Description: | HIGH-RESOLUTION SOLUTION STRUCTURE OF THE DOUBLE CYS2*HIS2 ZINC FINGER FROM THE HUMAN ENHANCER BINDING PROTEIN MBP-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.61993443866178 | bayes_pls_golite062009 |
| DNA binding | 0.94762880941053 | bayes_pls_golite062009 |
| transcription regulator activity | 0.83697324179524 | bayes_pls_golite062009 |
| nucleic acid binding | 0.393163105327437 | bayes_pls_golite062009 |
| protein binding | 0.309302474986083 | bayes_pls_golite062009 |
| transcription factor activity | 0.21812283292306 | bayes_pls_golite062009 |
|
Region A: Residues: [88-123] |
1 11 21 31 41 51
| | | | | |
1 SGELSTHISS NHITHDSKFV CLWKGCDREF KMFKAK
|
| Detection Method: | |
| Confidence: | 23.522879 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [124-302] |
1 11 21 31 41 51
| | | | | |
1 YKLVNHMRVH TGERPFLCDV CNKVFARSEN LKIHKRIHSG EKPFQCTHNG CTKLFANSSD 60
61 RKKHMHVHSS HKPYSCMYPD CGKTYTHPSS LRKHTKVHEN EKKSQLSPEH DESSDSGNAS 120
121 IGTPTTDESL TFSPENIKRD QHLHTMHTFM DRPNPFMQMY QNQFSNPTYH MFMAKPDSY
|
| Detection Method: | |
| Confidence: | 57.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
