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View Structure Prediction Details

Protein: CE32858
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32858.

Description E-value Query
Range
Subject
Range
gi|115745781, gi... - gi|115916244|ref|XP_788312.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi|11...
368.0 [0..22] [502..11]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVLLDVVT TTLASAINLE DFRHCFLWAL IVGICLAFLL GFGMGANDVA NAFGTSVGSK  60
   61 ALTLFQAYCL ATIFETLGAV LVGYNVIDTM RRGVVDVAVY NNSAGDFMVG QVAVLGGTAT 120
  121 WLLIATCLQL PVSTTHAVVG ATLGFSIACK GFQGIQWMKV VNIVASWFIS PIFAGTVSLI 180
  181 LYLFVDHVIL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTSNPVANGL MWLPIFYFAC LTFNMFMISY QGSKVLHLSN VPLWAAIVVS LGAGIIAAAV  60
   61 CYFLVNPRIR KYIAKGKEAR ESPTSSVVIS VTGDPELDKV AIRSESTTTN ASNSCDSLQT 120
  121 PSPSEPQGKI RKFFKWLFPD KSRV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [335-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESEDTLRMFT SVQVLTACFA GFAHGANDVC NAIAPLVALI AVYRDFDVYQ KKETPITVLL  60
   61 YGVFAICVGL WCLGHKVIRT VGTNMSEVNP ASGFCIEFGA AVTALLASKM GLPISTTHCL 120
  121 VGAVVAVGSV KGGKETDWSL FRNVAFSWVV TLPVAGLFAA LYMWLLHFTI PARYA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle