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View Structure Prediction Details

Protein: vhp-1
Organism: Caenorhabditis elegans
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vhp-1.

Description E-value Query
Range
Subject
Range
vhp-1 - protein tyrosine phosphatase status:Confirmed UniProt:Q10038 protein_id:AAK68299.1
256.0 [0..1] [437..156]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLPQSLSQ PCLSQPTGDG ITLITPNIYL GSQIDSLDET MLDALDISVV INLSMTCPKS  60
   61 VCIKEDKNFM RIPVNDSYQE KLSPYFPMAY EFLEKCRRAG KKCLIHCLAG ISRSPTLAIS 120
  121 YIMRYMKMGS DDAYRYVKER RPSISPNFNF MGQLLEYENV LIKDHVLDYN QA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.69897
Match: 2hxpA
Description: No description for 2hxpA was found.

Predicted Domain #2
Region A:
Residues: [173-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRPHRHMDYY GPSDLCPPKV PKSASSNCVF PGSTHDESSP SSPSVSEGSA ASEPETSSSA  60
   61 ASSSSTASAP PSMPSTSEQG TSSGTVNVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [262-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRNMTMDLG LPHRPKALGL PSRIGTSVAE LPSPSTELSR LSFNGPEAIA PSTPILNFTN  60
   61 PCFNSPIIPV ASSSREVILT LPTPAASSSS STSSEPSFDF SSFESSSSSS IVVENPFFAS 120
  121 TEVPAGSSSI STPSGSQSTP ASASSSAASR CRMKGFFKVF SKKAPASTST PVSIMKLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle