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View Structure Prediction Details

Protein: crh-1
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crh-1.

Description E-value Query
Range
Subject
Range
crh-1 - bZIP transcription factor status:Confirmed UniProt:Q9U2I1 protein_id:CAB54381.2
154.0 [0..1] [327..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMASTSNC SPVATSPLMM LLFKALQEGG DSEDEARRRR EQLNRRPSYR MILKDLETAD  60
   61 KVMKKEPEET PPSSVDASPL QFQSVMRPPP TAPPTSAATP NRILPSSNAA SPYGSPLGSS 120
  121 ILSNQPLVLP FAPINGDFDF SAAIAAASQP KVFPGGPQQN GLGGGGGGGG VPGPSSGIA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMSVQPPTSS TPSQQQSVQS LEGTSGLIGS AMKPMLGIDA VSFPEFGTTD WQSPMLSGGY  60
   61 SS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [242-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSPTMTGGS MRMGGGPLHG EDESNRKRQV RLLKNREAAK ECRRKKKEYV KCLENRVSVL  60
   61 ENQNKALIEE LKTLKELYCR KEKDGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1dh3A
Description: Transcription factor Creb
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle