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View Structure Prediction Details

Protein: crh-1
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crh-1.

Description E-value Query
Range
Subject
Range
crh-1 - bZIP transcription factor status:Confirmed UniProt:Q9U2I1 protein_id:CAB54381.2
154.0 [0..1] [327..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMASTSNC SPVATSPLMM LLFKALQEGG DSEDEARRRR EQLNRRPSYR MILKDLETAD  60
   61 KVMKKEPEET PPSSVDASPL QFQSVMRPPP TAPPTSAATP NRILPSSNAA SPYGSPLGSS 120
  121 ILSNQPLVLP FAPINGDFDF SAAIAAASQP KVFPGGPQQN GLGGGGGGGG VPGPSSGIA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMSVQPPTSS TPSQQQSVQS LEGTSGLIGS AMKPMLGIDA VSFPEFGTTD WQSPMLSGGY  60
   61 SS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [242-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSPTMTGGS MRMGGGPLHG EDESNRKRQV RLLKNREAAK ECRRKKKEYV KCLENRVSVL  60
   61 ENQNKALIEE LKTLKELYCR KEKDGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1dh3A
Description: Transcription factor Creb
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle