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View Structure Prediction Details

Protein: htp-1
Organism: Caenorhabditis elegans
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for htp-1.

Description E-value Query
Range
Subject
Range
htp-2 - status:Partially_confirmed UniProt:Q95XC8 protein_id:AAN63423.2
333.0 [0..1] [352..1]

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Predicted Domain #1
Region A:
Residues: [1-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLETIYDE SLNKSADSID DKKWSKLFPR IVSDPDRSSN FMTRAIYVAF SAVLRNRNIL  60
   61 GQEYFTKNYI TEKLKCMTLC FRNPRSNQIA QLLRNAGDAT KDGFLKEVSL VITNNEGDLE 120
  121 AIEVFSMKFI YFENGGVVAR LSTDKNGQED PHFAKLAQLV YEGGDSVRDQ MVTIVRSVQF 180
  181 LCTKVLEPLP EEFTANFRLE YTNDAPSNFR IDGFEDSSTF YTLPDDIQSA TIGHLRPGCH 240
  241 AANMECWSML MSDSYEAEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.522879
Match: 1s2hA
Description: The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.788773925855371 bayes_pls_golite062009
protein binding 0.475608160874066 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [260-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLKRHLDKVS DRHGFNPVNV LYKSFNSEDS DTSLSQATTE SVNDQGGNET SPVDDITESL  60
   61 EKAQMSPIQT RPTTRRGADG SKTRSSPYSR SCK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle