YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pqe-1
Organism: Caenorhabditis elegans
Length: 670 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqe-1.

Description E-value Query
Range
Subject
Range
pqe-1 - status:Confirmed UniProt:Q304E8 protein_id:ABB51184.1
427.0 [0..1] [670..1]

Back

Predicted Domain #1
Region A:
Residues: [1-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNGGYGSGN SFNLQNYAPI DPMTGIPGFG PSQNAQQQQQ QASAPGTSSG GPSQAVSGAS  60
   61 SGASMKTEPV ARQVSTAQMK RDLEQAAVYV PTPIPKKDAK SSENRAKEKQ KPMNKRPTSS 120
  121 ASVDSNDDGV HIPAKRMAHA SSVPGPSRSK PPMIGAVKNR PNHTEMLDKR NKESEEKRRK 180
  181 DRDELERLRN KKHTTEEEKI KMARLQNALK VVGKAAGLKA TVKKELTGSP AKKQKPAPAV 240
  241 PKILDFSVGR TFTAIRQTAI KLVFDTFLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [270-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDSPNAAREA QEFELSIAKQ YTDGQKYRIN IGHKVAALRK ENTSGILEVN KNAVSHDKIL  60
   61 AGGPKDNCTV A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [341-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGRKTHVDHR QLSIEKLHPL LLQFKLTTSE LETNAYPMRR DGSTKAVSIA DTVYTQNKKM  60
   61 FLDDYDMSRN CSRCNKEFKL SPNGTMIRST GICRYHNRGV AINGKRDTFR KRYSCCNEEF 120
  121 NVALGCKFSD VHVTDQLFKK ELSTFVSTPV PVPNDQRSTR VYALDCEMVY TIAGPALARL 180
  181 TMVDMQRNRV LDVFVKPPTD VLDPNTEFSG LTMEQINSAP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.09691
Match: 1zbuA
Description: No description for 1zbuA was found.

Predicted Domain #4
Region A:
Residues: [561-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTLKTCHQKL FKYVNADTIL IGHSLESDLK AMRVVHKNVI DTAILFRSTR DTKVALKVLS  60
   61 AKLLHKNIQG DNEDAIGHDS MEDALTCVDL IFYGLRNPES IAIREANTNC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1wljA
Description: human ISG20
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle