| Protein: | ptb-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 453 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptb-1.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..3] | [453..124] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MAAPQVLTSD HPYHQHDVVF RTAVVPAAPV NNNDVVVGAA STGRAAGKSV ANGSVSNFEV 60
61 GTQQQPNSVL RTIIENMMFP VSLDVLYQLF TRYGKVLRII TFNKNNTFQA LVQMSEANSA 120
121 QLAKQGLENQ NVYNGCCTLR IDYSKLSTLN VKYNNDKSRD YTNPNLPAGE MTLEQTIAMS 180
181 IPGLQNLIPA NPYNFAFGAN PATTFLTTQL AASTAAAAAV NDSANAAALA PYLNPLGLTS 240
241 ANLAPS
|
| Detection Method: |  |
| Confidence: | 24.39794 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.38904784081546 | bayes_pls_golite062009 |
| nucleic acid binding | 0.535128751388028 | bayes_pls_golite062009 |
| RNA binding | 0.423111514770653 | bayes_pls_golite062009 |
|
Region A: Residues: [247-453] |
1 11 21 31 41 51
| | | | | |
1 ISSMRFPMIN LTPVILVSNL HEMKVTTDAL FTLFGVYGDV MRVKILYNKK DNALIQYSEP 60
61 QQAQLALTHL DKVKWHDRLI RVAPSKHTNV QMPKEGQPDA GLTRDYAHST LHRFKKPGSK 120
121 NYLNIYPPCA TLHLSNIPTS VSEEKLKEMF AEAGFAVKAF KFFPKDHKMA LCQLEDIETA 180
181 IDALIAMHNH KLAENAHLRV SFSKSGI
|
| Detection Method: | |
| Confidence: | 42.522879 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.38904784081546 | bayes_pls_golite062009 |
| nucleic acid binding | 0.535128751388028 | bayes_pls_golite062009 |
| RNA binding | 0.423111514770653 | bayes_pls_golite062009 |
