| Protein: | nhr-80 |
| Organism: | Caenorhabditis elegans |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-80.
| Description | E-value | Query Range |
Subject Range |
|
|
283.0 | [0..1] | [485..174] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MTAEASSSST RCLICSAQAT GFHFEAQSCS ACAAFFRRTV ALTKSFKCIT GRDDCNVHYS 60
61 MHQICRSCRH KKCLSNGMKP GGVQPKKPNI ETGRAFFTKS GLKRNKKFAN VSPQTADEQK 120
121 LVVEGVKVPK IEV
|
| Detection Method: |  |
| Confidence: | 20.39794 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 2.44628241003393 | bayes_pls_golite062009 |
| DNA binding | 1.94519080035201 | bayes_pls_golite062009 |
| nucleic acid binding | 1.85629109425119 | bayes_pls_golite062009 |
| protein binding | 1.72653516930292 | bayes_pls_golite062009 |
| binding | 1.62447538331668 | bayes_pls_golite062009 |
| transcription factor activity | 1.37728257720121 | bayes_pls_golite062009 |
| transcription activator activity | 1.10952708883226 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.78199243307321 | bayes_pls_golite062009 |
| catalytic activity | 0.472235543748473 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.38848912999406 | bayes_pls_golite062009 |
|
Region A: Residues: [134-486] |
1 11 21 31 41 51
| | | | | |
1 QEPNSLEDLE QDNEFVIKTP TPRKISSSTS FSASTTTNYS TPGPSPMAPC SAGPDVLTLF 60
61 IREEMKLGER RRLLFSERAV GTLLGQNKHC PYKKEDIKPL VFHDFRLTIK THIMLVYEWL 120
121 QTWPELQELD DFDRMSLLRK AVLIHFLLDP SFLSYQIGEP DKLIMQNGGF ISTADHHGVG 180
181 WEDETDISGE NKRKYYVPIM KQITDEIMPA MEAMKITFEE FVALKALACF QGGFENVSEA 240
241 KRHLITQQVN RIMTSLHTHY LENSEEKIAE RFGTIVLMLS NIFTAGNDFV QNHREIDIFH 300
301 IWDLDKLVLQ LLNLDKIMET EARETAEKRA MRNGINVVNN NNDVLLGQAK LEK
|
| Detection Method: | |
| Confidence: | 44.0 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.96722324965091 | bayes_pls_golite062009 |
| DNA binding | 3.25939553877631 | bayes_pls_golite062009 |
| nucleic acid binding | 3.16396885393239 | bayes_pls_golite062009 |
| transcription activator activity | 2.6892852470567 | bayes_pls_golite062009 |
| transcription factor activity | 2.56099230851339 | bayes_pls_golite062009 |
| binding | 2.51356324019445 | bayes_pls_golite062009 |
| protein binding | 2.49676963514373 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20144353900307 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.1684625121246 | bayes_pls_golite062009 |
| signal transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| molecular transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| receptor activity | 1.28597420456904 | bayes_pls_golite062009 |
| transcription factor binding | 0.78455053961808 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 0.71366308307673 | bayes_pls_golite062009 |
| transcription repressor activity | 0.49585672359082 | bayes_pls_golite062009 |
| catalytic activity | 0.477341996033689 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.36233153809872 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.26050147400703 | bayes_pls_golite062009 |
