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View Structure Prediction Details

Protein: CE28552
Organism: Caenorhabditis elegans
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28552.

Description E-value Query
Range
Subject
Range
gi|91686953, gi|... - gi|91782999|ref|YP_558205.1| dihydrolipoamide dehydrogenase [Burkholderia xenovorans LB400], gi|9168...
235.0 [0..81] [454..1]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTGCCTTKF DTEVLIIGNG PAGIALSSFL SGMHPFYDAT HPHENVTVHE KLLANHDFSL  60
   61 IDQDLSWSSN LTELSQSGR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.981
Match: 2gjcA
Description: No description for 2gjcA was found.

Predicted Domain #2
Region A:
Residues: [80-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLSVLYDMLV RPGADMGSDA PGCIQWELNR RREIPHMVIG ETKIGGSWNE YDAEMLTVSF  60
   61 SDWMDMPGFT MEQWLGGRPL VKRLPSVAIA TYLKKYVERL RLRKKFHQYF VVNSIKKIGD 120
  121 VWVTSGKRST DGRSFVIRSK QVVVACGKTS PRKLQLPNEE HCSSNIVYDV RALKERLDAT 180
  181 KKTVIDEDEN YDTPSTSTCS PVIVVGDGVS SVDCVRHCLE RDIPVVHVIR RTLRELRNVM 240
  241 LSRLSPIHYS EYTDIYRMMI GRSVHKNYQR VLDASITSVS KIHVEITTGS NREIIEMPYS 300
  301 TVAVCIGRES HFSTVFENAH TFLDYQSEQD ETLFAVGAYA GDHFVRFLVG GCLRVAQHIT 360
  361 GAANNNNVTA KLLPIC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.39794
Match: 1ebdA
Description: Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.521405480600169 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle