YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: cdo-1
Organism: Caenorhabditis elegans
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdo-1.

Description E-value Query
Range
Subject
Range
CDO1_DANRE - Cysteine dioxygenase type 1 OS=Danio rerio GN=cdo1 PE=2 SV=1
251.0 [0..2] [188..10]

Back

Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISFVQLVVQ IREIFQQKLI DVDEVMKLMA SYKSNANEWR RFAIFDMNKY TRNLVDVGNG  60
   61 KYNLMILCWG PGMASSVHDH TDAHCFVKIL DGELTETKYA WPRKRHVPLD ISENKTYGMN 120
  121 GVSYMNDELG LHRMENLSHS NGAVSLHLYI PPYSTCNAFD ERTGKKTQCT VTFYSKYGKK 180
  181 VDYRGSKNGN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 2ic1A
Description: No description for 2ic1A was found.

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 1.79942166158385 bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 1.78958805205885 bayes_pls_golite062009
dioxygenase activity 0.855730327285165 bayes_pls_golite062009
binding 0.469306358852266 bayes_pls_golite062009
catalytic activity 0.401988496917198 bayes_pls_golite062009
protein binding 0.133891883527478 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle