| Protein: | fog-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 619 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fog-1.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..1] | [611..165] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MFPSGHNEKW TRGYQRENSL LHHDDEFRSF QRRTDCPQHF YQQTNGYEHS LFGEKAGFHE 60
61 ASAQNLLMHL ASQISPMEFA KLQLELLASQ NKQRPHRGAG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [101-409] |
1 11 21 31 41 51
| | | | | |
1 FGSYLMSPPA TVSSSRSTVL CCNPAPPYAS HCQSPAASDD FGHHFGSFDS MSAYNFHNNN 60
61 QQQRREAHVS RDGKSFDQGN IYTAEDVHTV VKNHRNENNQ RVVSNKVFVG GISHMMNRKI 120
121 INKFFGQFGT VFVDWPVKQK PNSRGKSIAI GSYSYLFLVY SDEQSVIKLM SACHRNSQND 180
181 FFVSVPGFRD MIQIRPWFIY NGFYILEKAR HNRIIDIHRT VFLGGLPRIV TAEEIAQMFS 240
241 EFGVVLLVTI DIDQDYGYPK GAARVTFERD SAFNRALEKK FLKFDNIDSS KTMIEIKPYV 300
301 MEDVGCDEC
|
| Detection Method: | |
| Confidence: | 21.39794 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| nucleic acid binding | 2.9003829560934 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| mRNA binding | 1.89927882528439 | bayes_pls_golite062009 |
| RNA binding | 1.53089788753207 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.214300208089751 | bayes_pls_golite062009 |
|
Region A: Residues: [410-522] |
1 11 21 31 41 51
| | | | | |
1 GGLWFNPFLS IYDHLKCAKD DHQKEQKMAE IKNFNMWSSR SPFSLNSGDG HDDLITKMDA 60
61 GFKKNCNLAC TYSNRENEKN ETEMGARKFL EMVKSFGLEK EKTVTVNGNE YPI
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 1fjeB |
| Description: | Nucleolin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.9003829560934 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| mRNA binding | 1.89927882528439 | bayes_pls_golite062009 |
| RNA binding | 1.53089788753207 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.214300208089751 | bayes_pls_golite062009 |
|
Region A: Residues: [523-619] |
1 11 21 31 41 51
| | | | | |
1 GPDLWDKFLP APKYDVGTEP VRMNPEAKLQ QFLRMKRTNV YSNKSAYCKE APCRQYYCPS 60
61 CSNKLHSGPN QHTLLPAGKP ERRPRKDKNM YLVNMGK
|
| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
