YRC Public Data Repository - Protein Structure Prediction

Protein:	CE26719
Organism:	Caenorhabditis elegans
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26719.

Description	E-value	Query Range	Subject Range
gi\|229811380, gi... - gi\|229845694\|ref\|ZP_04465817.1\| phosphoglycolate phosphatase [Haemophilus influenzae 6P18H1], gi\|229... gi\|144985848, gi... - gi\|145633479\|ref\|ZP_01789208.1\| phosphoglycolate phosphatase [Haemophilus influenzae 3655], gi\|14498... GPH_HAEI8 - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0697 PE=3 SV=1	169.0	[0..17]	[246..3]

Back

Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNLLRTTS RNLSTPPVVK VLSLDARDTL ITMKESPPIV YSRFARQYDL EVDSDQIMGS  60
   61 FLKNYKRMSI ASPCFGFNGI GNKSWWIEVV SSTLLDCAPD SEKGRVEVIA GALYNHYATP 120
  121 EPWKLVESDT RQTLQKLRLK GIILVVISNF DSRLKSLLSQ FNLLDLFSMT VLSGEIGYEK 180
  181 PDEKIFQLVV NHFDLISPSE ILHIGDNLKN DFHGAKNFGC RALLFDSSSS HNVEPFYCIS 240
  241 RLSDLKLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.660822867191303	bayes_pls_golite062009
hydrolase activity	0.194960782858734	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: