| Protein: | sma-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 393 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sma-3.
| Description | E-value | Query Range |
Subject Range |
|
|
549.0 | [0..1] | [393..3] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MNGLLHMHGP AVKKLLGWKI GEDEEKWCEK AVEALVKKLK KKNNGCGTLE DLECVLANPC 60
61 TNSRCITIAK SLDGRLQVSH KKGLPHVIYC RVWRWPDISS PHELRSIDTC SYPYESSSKT 120
121 MYICINPYHY QRLSRPQGLN SSMPSPQ
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 1ozjA |
| Description: | Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [148-393] |
1 11 21 31 41 51
| | | | | |
1 PISSPNTIWQ SSGSSTASCA SSPSPSVFSE DGGEVQVHQR PPPFRHPKSW AQITYFELNS 60
61 RVGEVFKLVN LSITVDGYTN PSNSNTRICL GQLTNVNRNG TIENTRMHIG KGIQLDNKED 120
121 QMHIMITNNS DMPVFVQSKN TNLMMNMPLV KVCRIPPHSQ LCVFEFNLFF QMLEQSCNDS 180
181 DGLNELSKHC FIRISFVKGW GEDYPRQDVT STPCWLELRL NVPLAYIDQK MKQTPRTNLM 240
241 EPNSMT
|
| Detection Method: | |
| Confidence: | 91.522879 |
| Match: | 1khuA |
| Description: | Smad1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11808492882744 | bayes_pls_golite062009 |
| protein binding | 1.57677875769005 | bayes_pls_golite062009 |
| transforming growth factor beta receptor, cytoplasmic mediator activity | 0.20688121694899 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase signaling protein activity | 0.17825540288715 | bayes_pls_golite062009 |
| signal transducer activity | 0.15088578328411 | bayes_pls_golite062009 |
| molecular transducer activity | 0.15088578328411 | bayes_pls_golite062009 |
