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View Structure Prediction Details

Protein: CE22586
Organism: Caenorhabditis elegans
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22586.

Description E-value Query
Range
Subject
Range
gi|39584844, gi|... - gi|39584849|emb|CAE67744.1| Hypothetical protein CBG13319 [Caenorhabditis briggsae], gi|39584844|emb...
gi|157773951, gi... - gi|157773951|ref|XP_001665041.1| hypothetical protein CBG13319 [Caenorhabditis briggsae AF16], gi|15...
176.0 [0..1] [124..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSGGQRKHT ISNKTRKRPG KDLDQIHEDL KPEKAAKLLQ QEIDYDLPGN GQFYCIECER  60
   61 HFVDEKTRQL HRKTKLHKNR VKTLKEVPYT QAEANAAGGS GFFPAITLKT RVELPKQPEI 120
  121 PIPVVAET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.045757
Match: 1zr9A
Description: Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.5693324142242 bayes_pls_golite062009
transcription regulator activity 1.20084827450202 bayes_pls_golite062009
DNA binding 1.11228868978256 bayes_pls_golite062009
nucleic acid binding 1.10067326005752 bayes_pls_golite062009
transcription factor activity 0.33874886911135 bayes_pls_golite062009
protein binding 0.186544761618633 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle