Protein: | hsf-1 |
Organism: | Caenorhabditis elegans |
Length: | 671 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsf-1.
Description | E-value | Query Range |
Subject Range |
|
336.0 | [0..1] | [671..1] |
Region A: Residues: [1-72] |
1 11 21 31 41 51 | | | | | | 1 MQPTGNQIQQ NQQQQQQLIM RVPKQEVSVS GAARRYVQQA PPNRPPRQNH QNGAIGGKKS 60 61 SVTIQEVPNN AY |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [73-273] |
1 11 21 31 41 51 | | | | | | 1 LETLNKSGNN KVDDDKLPVF LIKLWNIVED PNLQSIVHWD DSGASFHISD PYLFGRNVLP 60 61 HFFKHNNMNS MVRQLNMYGF RKMTPLSQGG LTRTESDQDH LEFSHPCFVQ GRPELLSQIK 120 121 RKQSARTVED KQVNEQTQQN LEVVMAEMRA MREKAKNMED KMNKLTKENR DMWTQMGSMR 180 181 QQHARQQQYF KKLLHFLVSV M |
Detection Method: | |
Confidence: | 43.69897 |
Match: | 1hksA |
Description: | SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 3.77201910025409 | bayes_pls_golite062009 |
binding | 3.52874320222492 | bayes_pls_golite062009 |
DNA binding | 3.44642410378325 | bayes_pls_golite062009 |
nucleic acid binding | 3.25777282180864 | bayes_pls_golite062009 |
transcription factor activity | 2.83460075788873 | bayes_pls_golite062009 |
transcription repressor activity | 2.39237599101586 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.08341148210578 | bayes_pls_golite062009 |
transcription activator activity | 1.98504395280033 | bayes_pls_golite062009 |
protein binding | 0.753698599635855 | bayes_pls_golite062009 |
transcription factor binding | 0.63938506997853 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.49916895549368 | bayes_pls_golite062009 |
specific transcriptional repressor activity | 0.0565989703351002 | bayes_pls_golite062009 |
Region A: Residues: [274-339] |
1 11 21 31 41 51 | | | | | | 1 QPGLSKRVAK RGVLEIDFCA ANGTAGPNSK RARMNSEEGP YKDVCDLLES LQRETQEPFS 60 61 RRFTNN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [340-517] |
1 11 21 31 41 51 | | | | | | 1 EGPLISEVTD EFGNSPVGRG SAQDLFGDTF GAQSSRYSDG GATSSREQSP HPIISQPQSN 60 61 SAGAHGANEQ KPDDMYMGSG PLTHENIHRG ISALKRDYQG ASPASGGPST SSSAPSGAGA 120 121 GARMAQKRAA PYKNATRQMA QPQQDYSGGF VNNYSGFMPS DPSMIPYQPS HQYLQPHQ |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [518-671] |
1 11 21 31 41 51 | | | | | | 1 KLMAIEDQHH PTTSTSSTNA DPHQNLYSPT LGLSPSFDRQ LSQELQEYFT GTDTSLESFR 60 61 DLVSNHNWDD FGNNVPLDDD EEGSEDPLRQ LALENAPETS NYDGAEDLLF DNEQQYPENG 120 121 FDVPDPNYLP LADEEIFPHS PALRTPSPSD PNLV |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.