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View Structure Prediction Details

Protein: rgs-4
Organism: Caenorhabditis elegans
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rgs-4.

Description E-value Query
Range
Subject
Range
gi|78214318, gi|... - gi|78214318|ref|NP_001030340.1| si:ch211-268e23.2 [Danio rerio], gi|77732542|gb|ABB01374.1| Rgs6 [Da...
183.0 [0..20] [234..270]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGEDALPV RGLHSEQNFR ESSQFFGVLS FVMRERRRRS NENQSNGNGS TPPTSANNMN  60
   61 MISPNQVPPS PRLSPNEWQF AFDHVIYDVD GRAQFTKFLQ SEYSEENILF WWAVEELKAV 120
  121 GVSEGRTKFE STVQEMYDTF IAAESPLAIN IDHDTRTDII ALVEGKEPST FPENIYERAQ 180
  181 AHVYRLMEKD CFSRFVHTNA YKDVAKKLSL PQTFRFNCIR LQPGGPTAQA AATN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.221849
Match: 1agrE
Description: Regulator of G-protein signalling 4, RGS4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.097429312485587 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle