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View Structure Prediction Details

Protein: CE21147
Organism: Caenorhabditis elegans
Length: 130 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21147.

Description E-value Query
Range
Subject
Range
gi|39579775, gi|... - gi|39579775|emb|CAE56013.1| Hypothetical protein CBG23568 [Caenorhabditis briggsae], gi|187040961|em...
170.0 [0..1] [130..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQAASKAV TFAYNGTIAS TLRKFAWSNL WGGREYGLQF HDTYFEPAPE VTEALRRLNL  60
   61 QEPHVFDQRK IRLSRAHTLA LHGEKLPKAE WTQWDQESWY LKPYLDEIEA EKKARAETSG 120
  121 LIPPYQMKQH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1bccF
Description: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 11.5736971809848 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 11.5736971809848 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 8.17739656377432 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 5.63908133042525 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 5.48702641896397 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.88973324048899 bayes_pls_golite062009
oxidoreductase activity 4.83598965448391 bayes_pls_golite062009
cation transmembrane transporter activity 4.64530477348772 bayes_pls_golite062009
ion transmembrane transporter activity 4.44988249046834 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.04580005556932 bayes_pls_golite062009
substrate-specific transporter activity 3.85284374888084 bayes_pls_golite062009
binding 1.28617491223126 bayes_pls_golite062009
catalytic activity 0.385153095337306 bayes_pls_golite062009
protein binding 0.327245700391852 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle