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View Structure Prediction Details

Protein: CE20573
Organism: Caenorhabditis elegans
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20573.

Description E-value Query
Range
Subject
Range
gi|115745781, gi... - gi|115916244|ref|XP_788312.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi|11...
386.0 [0..2] [512..12]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDPTVLLI IGAVIAFILA FAIGANDTAN SFGTSVGSKV LTLHQAYVLA SIFETLGACL  60
   61 LGHQVTDTMR KGVIDFSEFG KHENGTVLMS ENDLGHTIML GQIAILTGCG VWMLLATAFK 120
  121 LPVSTTHSIV GATIGFALVA QGSRVIVWEK IYRIFFSWII SPLLSGIVSV FIYLSLDHLV 180
  181 LRREQPLHSG IRVLPALYFI CFAFNVFAIV YKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFLYFDRLS LTQCLIISGV FGLAVALIFA FFLAPYLKDH ILSKELLEIT GKQRHSHHGH  60
   61 NEKSSSKRKE FEMEEGNGKY LESDNNGQPL LDQPTIVVST CPSNGESTSS FAKNTIRPSS 120
  121 SLASFFRSCK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEDPQASRLF SLLQVMTACF GGFAHGGNDV SNAIAPLVSL YLIANDGMKS ADMETPWYLL  60
   61 LYGSFGMCLG LWVLGHRVIY TVGENLTKIT PASGFAVEFG AAVTVLIASK LGLPISSTQC 120
  121 KVGSVVAVGL VQSRHQVHWG VFRNISLSWI VTLPVAGLLS GGTMMILHLF SFGTDATPKD 180
  181 SILQLFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle