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View Structure Prediction Details

Protein: CE20573
Organism: Caenorhabditis elegans
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20573.

Description E-value Query
Range
Subject
Range
gi|115745781, gi... - gi|115916244|ref|XP_788312.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi|11...
386.0 [0..2] [512..12]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDPTVLLI IGAVIAFILA FAIGANDTAN SFGTSVGSKV LTLHQAYVLA SIFETLGACL  60
   61 LGHQVTDTMR KGVIDFSEFG KHENGTVLMS ENDLGHTIML GQIAILTGCG VWMLLATAFK 120
  121 LPVSTTHSIV GATIGFALVA QGSRVIVWEK IYRIFFSWII SPLLSGIVSV FIYLSLDHLV 180
  181 LRREQPLHSG IRVLPALYFI CFAFNVFAIV YKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFLYFDRLS LTQCLIISGV FGLAVALIFA FFLAPYLKDH ILSKELLEIT GKQRHSHHGH  60
   61 NEKSSSKRKE FEMEEGNGKY LESDNNGQPL LDQPTIVVST CPSNGESTSS FAKNTIRPSS 120
  121 SLASFFRSCK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEDPQASRLF SLLQVMTACF GGFAHGGNDV SNAIAPLVSL YLIANDGMKS ADMETPWYLL  60
   61 LYGSFGMCLG LWVLGHRVIY TVGENLTKIT PASGFAVEFG AAVTVLIASK LGLPISSTQC 120
  121 KVGSVVAVGL VQSRHQVHWG VFRNISLSWI VTLPVAGLLS GGTMMILHLF SFGTDATPKD 180
  181 SILQLFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle