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View Structure Prediction Details

Protein: CE20571
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20571.

Description E-value Query
Range
Subject
Range
RRP1B - ribosomal RNA processing 1 homolog B (S. cerevisiae)
392.0 [0..1] [384..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVDLASVEV VFAQKLACGE PATRQRALRV LHDWIRDQSA KKHFDDADLM RLCKGLHYVM  60
   61 WMQDKMILQE ELADRIGGLI NIFTSEEEKV RFVACFLKSL SKEWPHIDRW RMDKFLMEVR 120
  121 RMVRACFTHL AELK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKKDIRDEYW KVFQETTIST DKSFNEALKF HFASILLDEL DAAGGLTKKQ VTACLKPYIE  60
   61 LLGNKDISEY LFTSLYEEIF KTILQQKSD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [224-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LITAVEEGEE MDQGGIEFSY KEIGALLFEV GKQEHLNAKR RKKIYDLVKK FDKSSRGQDP  60
   61 LHFETPVPKE RLTRHDYEEA EKKAIVLANS FKQERKSSRK VKSQIKKRAR EAAEAARQEN 120
  121 GDDVPDDEIA EVKKGNGKKT AVPKVKKGRP LLKAKGVGKK RMVGGLKRKA GKKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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