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View Structure Prediction Details

Protein: ucr-2.1
Organism: Caenorhabditis elegans
Length: 410 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ucr-2.1.

Description E-value Query
Range
Subject
Range
gi|73981963 - gi|73981963|ref|XP_533104.2| PREDICTED: similar to Mitochondrial processing peptidase beta subunit, ...
366.0 [0..10] [410..67]

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Predicted Domain #1
Region A:
Residues: [1-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRPSGTVA KRFVSAAAKS AGVQEKTTVL ENGLRVSSVE LNGATSSIVL AFRAGSRYQP  60
   61 ANKQGLTHLI RNSVGRDAPN FPGLALVWNT AQNGGNLTAV SNRDVLAIEV NVVRDQSAVV 120
  121 LSLLGQLGNN AFKPWDVEDV KHDTLPADAT YLTGTTIAFE QLHQAAFRNG GLGLSNYSVN 180
  181 NVSAKDLSAF AKERLVAGEA VLVGVNVDHD TLVQAGSTQF PLAQNQPAKA TPAKYFGGEA 240
  241 RKDGRGNRSY VAIAGEGSAI TSVKDVAVQA VVAQILLNAA QKVTSEAISV NVNYQDSGLV 300
  301 GVQFAACNTQ ITQVTKSIAS AIKSAKADGL DNAKNTAAVQ VLSDAQHASE VALEKATQVL 360
  361 AGVEVSPREF ADAIRAVTAQ DVTQALSRVN GKLSLAAYGS TSLVPYLDEL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.0
Match: 1sqbA
Description: Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 7.1634551723228 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 7.1634551723228 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 6.64269017601856 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.17510847735476 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.03221088799464 bayes_pls_golite062009
oxidoreductase activity 3.89224384280888 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.48526983761385 bayes_pls_golite062009
cation transmembrane transporter activity 3.30443970063928 bayes_pls_golite062009
ion transmembrane transporter activity 3.14174223148448 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.79848305609896 bayes_pls_golite062009
substrate-specific transporter activity 2.6563825341516 bayes_pls_golite062009
binding 1.31612690754187 bayes_pls_golite062009
catalytic activity 1.30647052031202 bayes_pls_golite062009
hydrolase activity 0.27509516668746 bayes_pls_golite062009
protein binding 0.136316742962376 bayes_pls_golite062009
molecular transducer activity 0.130605737425625 bayes_pls_golite062009
signal transducer activity 0.130605737425625 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle