| Protein: | ape-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 769 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ape-1.
| Description | E-value | Query Range |
Subject Range |
|
|
700.0 | [0..3] | [768..233] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MVTTSSGGGI GYPANNGVTQ VSLIHSSDSV RTVSTAPIYR PTSSMASTMA HKSSTAPFIS 60
61 ANQRMSKPPV RVVAQPPPPH PQALSQQYHQ QNPMMMYSAP NTRPHVIPTM QVQPTMAAQI 120
121 KRNNPVNAQF QNPSEMIADY GVKPQSVEMV QRVRAVRRQV ADEETE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [167-284] |
1 11 21 31 41 51
| | | | | |
1 LRRLRELEHE TAQLQNKNYG RERELNVQGS MLKEAQLELR NASMRAQSLN KHLEEMYRRR 60
61 QTAAAAALVE QRKMQQHQIL LARAANQVST QEVIRPRASV EPFQVNNTQQ QQPSPQMM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [285-348] |
1 11 21 31 41 51
| | | | | |
1 KSEEFSEKRD LNGQTGSYDA IDGSGDHQKI PTEPSYLAPC KENQQKYSEL SKMASTDPHS 60
61 NHSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [349-643] |
1 11 21 31 41 51
| | | | | |
1 PSTSSQKAPT LITFSPPSFE QKINSSTMTR DSPFVERPTS FGDSLDESRL RSGKTDLVSL 60
61 RSDSLKATKR RSWAASEGTS MSEAEMIHRL LDEQRRGRSH FIPQLPTSQE EPSAITSETY 120
121 AEEVVNSESK QVATSSDSTN NLELPTEQMV LGSDTTTEED ASSCSTRSDD GQNLEMEVAI 180
181 ERRTVKGILR RPNEKMNKGR IEFDPLALLL DAALEGELDL VRSSASKLTD VSQANDEGIT 240
241 ALHNAICAGH YEIVRFLIEN DADVNAQDSD GWTPLHCAAS CNNLPMVRQL VEGGG
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 1k3zD |
| Description: | Transcription factor inhibitor I-kappa-B-beta, IKBB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.85450951074782 | bayes_pls_golite062009 |
| binding | 1.67882758018256 | bayes_pls_golite062009 |
|
Region A: Residues: [644-769] |
1 11 21 31 41 51
| | | | | |
1 CVLASTLSDM ETPVEKCEED EDGYDGCLKY LSAAHNSTGS INTGKVYAAY GYEAAFEDEL 60
61 SFDAGDELTV IEKDKVDKNW WTCEKNNGEK GQVPRTYLAL YPSLKYRKKL NFVMFDLPLE 120
121 SNNNVE
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1ycsB |
| Description: | 53BP2 |
Matching Structure (courtesy of the PDB): |
|
