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View Structure Prediction Details

Protein: CE19710
Organism: Caenorhabditis elegans
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19710.

Description E-value Query
Range
Subject
Range
CE18750 - status:Confirmed UniProt:Q9XTF7 protein_id:CAB05224.1
269.0 [0..1] [340..1]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLTVFLAT VAITISAAQN TCNTQSTINR PVNGQPVYWP ATWRENQTAP ALAEDQSCSW  60
   61 IVTIPEGYYA RLIINGKMGD PYSHFLTIDS AGNLITSSHE TMQPYFFPPS KFTLSLSNDE 120
  121 VAAFAFKIEW SPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.154902
Match: 1szbA
Description: Crystal structure of the human MBL-associated protein 19 (MAp19)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.00860492535308899 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [134-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIPTSYDAGI GMQPHVLNIT KDRFAAEFNS DAVSLLVSPV DPKNYYSLRS TLVFEGQDFN  60
   61 GFYRTNLYLL YRSRQQWISS KQTIYVINLE ASNKLDTLLI QDAQYTRDYA DYVQLNCGGS 120
  121 TTCIATVDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [263-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKKSAIASV LVSQNNETLV DIRMDPSATM KVYYGSETAF AFDSTYNGST INSLLPLTFY  60
   61 GSYVTQYVIS NGKATLTFNI PQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle