YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19639
Organism:	Caenorhabditis elegans
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19639.

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	214.0	[0..15]	[293..1063]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	203.0	[0..19]	[292..153]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	203.0	[0..19]	[292..163]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	202.0	[0..2]	[293..56]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	202.0	[0..19]	[292..300]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVETEWTQVS YDEGRQALKK WRECGVRRSD EVVEIWEHVI SRSPASLGDE QWAVLEQVCI  60
   61 AALDAARVDL AQDCIDQLHA QFPKSNRVLK LKAMQLESTE HYQKALDIYE RLVEDEPNNN 120
  121 SFRKRKVAVL LAQGKRLDAI RAINDYLKIF LNDPEAWLQL SELFLLENDV AKAVHCLEEC 180
  181 VLISPLNSMY FRRLADLRYT QGGAENVELA RSYYERALKI NPTDLRSQYG ILLSNNLIAA 240
  241 TTKNATEKKK AGAAAVDAID NLVNRYQKIS PKSNPESDGI LNCLEAMKVT VGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.045757
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.09193012129784	bayes_pls_golite062009
protein binding	1.52807685989528	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: