| Protein: | nhr-80 |
| Organism: | Caenorhabditis elegans |
| Length: | 504 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-80.
| Description | E-value | Query Range |
Subject Range |
|
|
297.0 | [0..1] | [466..75] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MTAEGRYLEI RKKTVKSKFR FPASSSSTRC LICSAQATGF HFEAQSCSAC AAFFRRTVAL 60
61 TKSFKCITGR DDCNVHYSMH QICRSCRHKK CLSNGMKPGG VQPKKPNIET GRAFFTKSGL 120
121 KRNKKFANVS PQTADEQKLV V
|
| Detection Method: |  |
| Confidence: | 21.045757 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 2.44628241003393 | bayes_pls_golite062009 |
| DNA binding | 1.94519080035201 | bayes_pls_golite062009 |
| nucleic acid binding | 1.85629109425119 | bayes_pls_golite062009 |
| protein binding | 1.72653516930292 | bayes_pls_golite062009 |
| binding | 1.62447538331668 | bayes_pls_golite062009 |
| transcription factor activity | 1.37728257720121 | bayes_pls_golite062009 |
| transcription activator activity | 1.10952708883226 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.78199243307321 | bayes_pls_golite062009 |
| catalytic activity | 0.472235543748473 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.38848912999406 | bayes_pls_golite062009 |
|
Region A: Residues: [142-504] |
1 11 21 31 41 51
| | | | | |
1 EGVKVPKIEV QEPNSLEDLE QDNEFVIKTP TPRKISSSTS FSASTTTNYS TPGPSPMAPC 60
61 SAGPDVLTLF IREEMKLGER RRLLFSERAV GTLLGQNKHC PYKKEDIKPL VFHDFRLTIK 120
121 THIMLVYEWL QTWPELQELD DFDRMSLLRK AVLIHFLLDP SFLSYQIGEP DKLIMQNGGF 180
181 ISTADHHGVG WEDETDISGE NKRKYYVPIM KQITDEIMPA MEAMKITFEE FVALKALACF 240
241 QGGFENVSEA KRHLITQQVN RIMTSLHTHY LENSEEKIAE RFGTIVLMLS NIFTAGNDFV 300
301 QNHREIDIFH IWDLDKLVLQ LLNLDKIMET EARETAEKRA MRNGINVVNN NNDVLLGQAK 360
361 LEK
|
| Detection Method: | |
| Confidence: | 44.522879 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.96722324965091 | bayes_pls_golite062009 |
| DNA binding | 3.25939553877631 | bayes_pls_golite062009 |
| nucleic acid binding | 3.16396885393239 | bayes_pls_golite062009 |
| transcription activator activity | 2.6892852470567 | bayes_pls_golite062009 |
| transcription factor activity | 2.56099230851339 | bayes_pls_golite062009 |
| binding | 2.51356324019445 | bayes_pls_golite062009 |
| protein binding | 2.49676963514373 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20144353900307 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.1684625121246 | bayes_pls_golite062009 |
| signal transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| molecular transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| receptor activity | 1.28597420456904 | bayes_pls_golite062009 |
| transcription factor binding | 0.78455053961808 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 0.71366308307673 | bayes_pls_golite062009 |
| transcription repressor activity | 0.49585672359082 | bayes_pls_golite062009 |
| catalytic activity | 0.477341996033689 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.36233153809872 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.26050147400703 | bayes_pls_golite062009 |
