YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19133
Organism:	Caenorhabditis elegans
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19133.

Description	E-value	Query Range	Subject Range
gi\|32421521, gi\|... - gi\|32421521\|ref\|XP_331204.1\| hypothetical protein [Neurospora crassa], gi\|28920855\|gb\|EAA30197.1\| hy... gi\|85067694 - gi\|85067694\|ref\|XP_959433.1\| hypothetical protein [Neurospora crassa OR74A]	348.0	[0..4]	[231..25]
gi\|27802999 - gi\|27802999\|emb\|CAD60702.1\| unnamed protein product [Podospora anserina]	345.0	[0..4]	[231..18]
gi\|39591849, gi\|... - gi\|39591849\|emb\|CAE71427.1\| Hypothetical protein CBG18338 [Caenorhabditis briggsae], gi\|187025344\|em... gi\|157775731 - gi\|157775731\|ref\|XP_001665931.1\| hypothetical protein CBG18338 [Caenorhabditis briggsae AF16]	343.0	[0..1]	[231..1]
gi\|71000647, gi\|... - gi\|71000647\|ref\|XP_755005.1\| RNA processing protein Emg1 [Aspergillus fumigatus Af293], gi\|66852642\|... gi\|159128019 - gi\|159128019\|gb\|EDP53134.1\| RNA processing protein Emg1, putative [Aspergillus fumigatus A1163]	341.0	[0..4]	[231..24]
gi\|164607178, gi... - gi\|27713326\|ref\|XP_232345.1\| PREDICTED: similar to Probable ribosome biogenesis protein NEP1 (C2f pr...	339.0	[0..3]	[231..18]
NEP1_CANAX - Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans GN=NEP1 PE=3 SV=1	339.0	[0..7]	[230..37]
gi\|46435312, gi\|... - gi\|68484534\|ref\|XP_713798.1\| hypothetical protein CaO19.665 [Candida albicans SC5314], gi\|68484455\|r... orf19.665, orf19... - NEP1 CGDID:CAL0001059 Assembly 19, Contig19-10064 (27357, 26554) CDS, reverse complemented, translat...	338.0	[0..7]	[230..37]
gi\|49090870, gi\|... - gi\|67524603\|ref\|XP_660363.1\| hypothetical protein AN2759.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	338.0	[0..4]	[231..30]
gi\|46136675, gi\|... - gi\|46136675\|ref\|XP_390029.1\| hypothetical protein FG09853.1 [Gibberella zeae PH-1], gi\|42553177\|gb\|E...	337.0	[0..4]	[231..21]
EMG1 - EMG1 nucleolar protein homolog (S. cerevisiae)	337.0	[0..10]	[231..26]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEYDTVAP PNAKRMKTDN QLEDKKILYV VLEGCSLETA KVGGEYAILS SDKHANFLRK  60
   61 QKKDPADYRP DILHQCLLNL LDSPLNRAGK LRVFFRTSKN VLVDVSPQCR IPRTFDRFCG 120
  121 LMVQLLHKLS IRAAETTQKL MSVVKNPVSN HLPVGSRKML MSFNVPELTM ANKLVAPETD 180
  181 EPLVLIIGGI ARGKIVVDYN DSETKISNYP LSAALTCAKV TSGLEEIWGI I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	2v3kA
Description:	No description for 2v3kA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.595660793867997	bayes_pls_golite062009
protein binding	0.303628351374506	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: