YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19055
Organism:	Caenorhabditis elegans
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19055.

Description	E-value	Query Range	Subject Range
gi\|119587079, gi... - gi\|30582781\|gb\|AAP35617.1\| tubulin, beta, 4 [Homo sapiens], gi\|119587079\|gb\|EAW66675.1\| hCG2042771 [... gi\|61362363, gi\|... - gi\|61362363\|gb\|AAX42207.1\| tubulin beta 4 [synthetic construct], gi\|61362358\|gb\|AAX42206.1\| tubulin ...	141.0	[0..2]	[84..700]
gi\|30584215, gi\|... - gi\|60653943\|gb\|AAX29664.1\| tubulin beta 4 [synthetic construct], gi\|30584215\|gb\|AAP36356.1\| Homo sap...	141.0	[0..2]	[84..700]
gi\|91086093 - gi\|91086093\|ref\|XP_967267.1\| PREDICTED: similar to beta1-tubulin [Tribolium castaneum]	137.0	[0..2]	[84..353]
gi\|48095525 - gi\|48095525\|ref\|XP_392313.1\| PREDICTED: similar to -Tubulin at 56D CG9277-PB, isoform B [Apis mellif...	136.0	[0..2]	[84..353]
gi\|157132376, gi... - gi\|157132376\|ref\|XP_001656025.1\| tubulin beta chain [Aedes aegypti], gi\|108881720\|gb\|EAT45945.1\| tub...	136.0	[0..2]	[84..353]
gi\|58377632, gi\|... - gi\|58377632\|ref\|XP_309765.2\| ENSANGP00000002671 [Anopheles gambiae str. PEST], gi\|55244382\|gb\|EAA055...	136.0	[0..2]	[84..338]
gi\|182889024, gi... - gi\|182889024\|gb\|AAI64534.1\| Zgc:153264 protein [Danio rerio], gi\|115529425\|ref\|NP_001070241.1\| hypot...	136.0	[0..2]	[84..353]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFIPFHNV CMLSDTTAIA EAWSRLDYKF DLMYAKRAFV HWYVGEGMEE GEFTEAREDL  60
   61 AALEKDYEEV GADSNEGLEE DGEEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1z2bA
Description:	Tubulin-colchicine-vinblastine: stathmin-like domain complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits