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View Structure Prediction Details

Protein: CE19029
Organism: Caenorhabditis elegans
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19029.

Description E-value Query
Range
Subject
Range
gi|91078244 - gi|91078244|ref|XP_970364.1| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]
252.0 [0..25] [470..683]

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Predicted Domain #1
Region A:
Residues: [1-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSNIPYVL EESSAKPKRF WMELTPRRHE LLSTYLLGIG TLFLYTGYSL QQFIGESVIH  60
   61 SIHEKSPDTI SAYAGYYGAA FHLSAFAVFS LITPSLQHFV PSKWFLTLAS ALFAVYYLGF 120
  121 FQLNKYYFYL TQALMGVGYS FYNNGEGQYL SEHSSRRTIE SNTGIETAVG HASMFFGGIA 180
  181 LIVLCFLLHT DGGTGIEYSD LQIRFIYGTM FILNIFSVIV FAFLPTKQYD SIASKSSTVV 240
  241 PSFANQIKQL LKAFQSTNLL ILMPFFFFQG FAVSFLMTVY PTTLSFTHAF KTDIYIIGIY 300
  301 SVSMGLAEAI GGIFLRPLLK RAGDYGLYVT AGFNFLSYSV VIILAFLSIP NLSTFGPTSS 360
  361 PPIFLTPSRL LVFIIGFLIG FSDFCVTMAR AVICQVAVPD CRMQVFSLSK LYQSGSSVVV 420
  421 LLLTPYMTIY IWLCVLTIFL LIGTTCFVIV ARRTAADRQK HSIAHPSQAQ LADKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.557257328314518 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle