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View Structure Prediction Details

Protein: CE18777
Organism: Caenorhabditis elegans
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18777.

Description E-value Query
Range
Subject
Range
gi|28478878, gi|... - gi|75832049|ref|NP_001028461.2| solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Mus m...
239.0 [0..32] [488..55]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYVARFFNH PEINLITTTV LIFASLYIAI ISLLGHDFLT PLHAIPPGAP SENKTVKSTF  60
   61 IIFLLLFGGL FAAKSSNALR LPPLFGCLAL GIVIRNVDVL KD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFIIPPFTET MIRKVALAMI VIRWGLATDV KFLYENAVTP VTIGLVTAIG EIIAITIASF  60
   61 LILDISFVMA VFCALILVIV SPAVTVPAMI SFKERGLGSS KRIPENVLAV CCVDNLFCVI 120
  121 VFMVLSSIIF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [233-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDAPIATTIL MNAGSILLGC IGGIIIGLLL WRFPRPDTTH TQFARITLLG TSCIGLMIGT  60
   61 YLVKYSCAGF LAALITSSMC AMK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [316-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKTDNKDKLD CVVSTYKYVW DSFALPLLFI CLGLKFDFST LSWKIVLLCI SVICIGLIVR  60
   61 ALLVMLTTHF SHFNVKEKAV IALSLLPRAT FQADLAPTLV VMATPFPDKL PDAELVMKAA 120
  121 ILSVLITAPI FDILLNLIGS KFLYHVLPQE DVALENNEVP TENGSKLFAA DNLFSDDTKI 180
  181 ASL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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