YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE18777
Organism: Caenorhabditis elegans
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18777.

Description E-value Query
Range
Subject
Range
gi|28478878, gi|... - gi|75832049|ref|NP_001028461.2| solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Mus m...
239.0 [0..32] [488..55]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYVARFFNH PEINLITTTV LIFASLYIAI ISLLGHDFLT PLHAIPPGAP SENKTVKSTF  60
   61 IIFLLLFGGL FAAKSSNALR LPPLFGCLAL GIVIRNVDVL KD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFIIPPFTET MIRKVALAMI VIRWGLATDV KFLYENAVTP VTIGLVTAIG EIIAITIASF  60
   61 LILDISFVMA VFCALILVIV SPAVTVPAMI SFKERGLGSS KRIPENVLAV CCVDNLFCVI 120
  121 VFMVLSSIIF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [233-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDAPIATTIL MNAGSILLGC IGGIIIGLLL WRFPRPDTTH TQFARITLLG TSCIGLMIGT  60
   61 YLVKYSCAGF LAALITSSMC AMK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [316-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKTDNKDKLD CVVSTYKYVW DSFALPLLFI CLGLKFDFST LSWKIVLLCI SVICIGLIVR  60
   61 ALLVMLTTHF SHFNVKEKAV IALSLLPRAT FQADLAPTLV VMATPFPDKL PDAELVMKAA 120
  121 ILSVLITAPI FDILLNLIGS KFLYHVLPQE DVALENNEVP TENGSKLFAA DNLFSDDTKI 180
  181 ASL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle