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View Structure Prediction Details

Protein: CE18445
Organism: Caenorhabditis elegans
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18445.

Description E-value Query
Range
Subject
Range
gi|91078244 - gi|91078244|ref|XP_970364.1| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]
300.0 [0..20] [473..688]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEESLPPSS GSKMSPRAFE LLCVVMLGFG HLCIMTGCDS QAFILESVIN SIHERDPARI  60
   61 NSHAGYYGQA TCYLAFVFTC LVSPTFLYAT SAKTTLIIAA ACFTSFPLGF LYTNQYYYFF 120
  121 SAALNGVGFA LYYTGNGGYL TSHSTRKTIE SNVSISWAIG SSCMIVGAGI IALITFLTAG 180
  181 QGSEVAMDLA NATVTQHFER RFSDTEIYLL FSVFAAISFV GCITFALLPS NDIGNCIESS 240
  241 KKIVAFRDGI ALMYRAFRSP KMIVLIPTFV LTGVHTSFWV SIYPTTLTFN SHLSAMIYLP 300
  301 AIYSFGVGLG ETTMGLLISF CSKRIKNFGM RPTMFIGCFL TCLYCALVVI STPPTAPMAP 360
  361 TSEKPLLFQP TRYLVFIIAL IGGMSDCCLC SVRSVVCAIA MPTRRNQAFS VSKFYQAIGC 420
  421 CVIFFISPLL NIYYYVIGIP ILCIIASVCF FFETRRIKQM EKSLTNMELD QAQQRRRSSK 480
  481 YDTLDEEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.557257328314518 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle