YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18119
Organism:	Caenorhabditis elegans
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18119.

Description	E-value	Query Range	Subject Range
gi\|28173040, gi\|... - gi\|28173040\|gb\|AAO32675.1\| hyperosmotic glycine rich protein [Salmo salar], gi\|185133178\|ref\|NP_0011...	123.0	[0..1]	[84..1]
gi\|73987338 - gi\|73987338\|ref\|XP_868602.1\| PREDICTED: similar to cold inducible RNA binding protein isoform 4 [Can...	119.0	[0..1]	[84..48]
gi\|77735511, gi\|... - gi\|77735511\|ref\|NP_001029450.1\| cold inducible RNA binding protein [Bos taurus], gi\|74353851\|gb\|AAI0...	118.0	[0..1]	[84..1]
gi\|109122725 - gi\|109122725\|ref\|XP_001094149.1\| PREDICTED: similar to cold inducible RNA binding protein [Macaca mu...	118.0	[0..1]	[84..1]
gi\|55778182 - gi\|55778182\|gb\|AAH86491.1\| Rbm3 protein [Mus musculus]	116.0	[0..1]	[84..1]
gi\|53128363, gi\|... - gi\|71897051\|ref\|NP_001026518.1\| cold inducible RNA binding protein [Gallus gallus], gi\|53128363\|emb\|...	116.0	[0..1]	[84..1]
gi\|94733362 - gi\|94733362\|emb\|CAK04927.1\| cold inducible RNA binding protein [Danio rerio]	115.0	[0..1]	[84..18]
gi\|21388662 - gi\|21388662\|dbj\|BAC00787.1\| glycine-rich RNA-binding protein [Physcomitrella patens]	115.0	[0..1]	[84..39]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQGFSVYV GNVPYQGTEE EIGNYFAAVG HVNNVRIVYD RETGRPRGFA FVEFSEEAGA  60
   61 QRAVEQLNGV AFNGRNLRVN YANK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1x5sA
Description:	Solution structure of RRM domain in A18 hnRNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.86761524461453	bayes_pls_golite062009
nucleic acid binding	0.984778969024386	bayes_pls_golite062009
protein binding	0.426607329742248	bayes_pls_golite062009
RNA binding	0.0622892880461364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: