YRC Public Data Repository - Protein Structure Prediction

Protein:	cri-3
Organism:	Caenorhabditis elegans
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cri-3.

Description	E-value	Query Range	Subject Range
gi\|187031347, gi... - gi\|39590653\|emb\|CAE65023.1\| Hypothetical protein CBG09861 [Caenorhabditis briggsae], gi\|187031347\|em... gi\|157774177 - gi\|157774177\|ref\|XP_001665154.1\| hypothetical protein CBG09861 [Caenorhabditis briggsae AF16]	268.0	[0..1]	[235..1]
gi\|126540523, gi... - gi\|56237886\|emb\|CAI26064.1\| complement component 1, q subcomponent binding protein [Mus musculus], g...	263.0	[0..6]	[235..44]
C1QBP_RAT - Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Rattus norvegicus GN=C1qbp P...	262.0	[0..6]	[235..44]
gi\|109112933 - gi\|109112933\|ref\|XP_001100940.1\| PREDICTED: similar to complement component 1, q subcomponent bindin...	253.0	[0..4]	[235..37]
gi\|15080897, gi\|... - gi\|15080899\|gb\|AAK83695.1\|AF283279_1 globular head receptor of C1 complement protein [Cercopithecus ...	248.0	[0..4]	[235..37]
gi\|1096067 - gi\|1096067\|prf\|\|2110369A tat-associated protein	245.0	[0..8]	[235..39]
C1QBP_BOVIN - Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Bos taurus GN=C1QBP PE=2 SV=...	245.0	[0..3]	[235..33]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTASLVRSL SRVALRSSQV VRMAAPRHFS QSAKVLSVTP ELQQALNREI EAEQQLSSDN  60
   61 LQGAVAPTFA GFQVTNKDAE VRLTKKNGSE DILVVFNVNH SVDMDEGFDD EPSQAVAPVP 120
  121 VAMPPFTVEI TKGDQRLCFH LELVPVDDQP DEYDFRVEEF YVAPSAKNGN EDVPSEVYAS 180
  181 SGKYIDPDLH DLLFVRYLEE RGLDARFCKT LVAYATHYEH SQYVGLLDKI KKFISK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.221849
Match:	1p32A
Description:	Acidic mitochondrial matrix protein p32
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.589152565268402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: