YRC Public Data Repository - Protein Structure Prediction

Protein:	pas-6
Organism:	Caenorhabditis elegans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pas-6.

Description	E-value	Query Range	Subject Range
gi\|157108440, gi... - gi\|157108440\|ref\|XP_001650228.1\| proteasome subunit alpha type [Aedes aegypti], gi\|108868538\|gb\|EAT3...	263.0	[0..1]	[239..1]
AGAP010253-PA - 20S proteasome subunit alpha 6\|protein_coding\|3R:51664738:51665706:-1\|gene:AGAP010253 gi\|116118542, gi... - gi\|119114702\|ref\|XP_319444.3\| AGAP010253-PA [Anopheles gambiae str. PEST], gi\|116118542\|gb\|EAA13963....	263.0	[0..1]	[257..1]
gi\|114636649 - gi\|114636649\|ref\|XP_508298.2\| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome comp...	262.0	[0..1]	[259..104]
gi\|109107255 - gi\|109107255\|ref\|XP_001089332.1\| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome c...	262.0	[0..1]	[259..109]
gi\|73988867 - gi\|73988867\|ref\|XP_534070.2\| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome compo...	261.0	[0..1]	[259..106]
gi\|123995969 - gi\|123995969\|gb\|ABM85586.1\| proteasome (prosome, macropain) subunit, alpha type, 1 [synthetic constr... PSMA1 - proteasome (prosome, macropain) subunit, alpha type, 1 gi\|21465661, gi\|... - gi\|21465661\|pdb\|1IRU\|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resoluti... ENSPTRT000000064... - null, null ENSOCUP00000000384 - pep:novel chromosome:oryCun2:1:156247387:156260205:-1 gene:ENSOCUG00000000439 transcript:ENSOCUT0000...	259.0	[0..1]	[259..1]
PSA1_BOVIN - Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1	259.0	[0..1]	[259..1]
PSA1_PONPY - Proteasome subunit alpha type-1 - Pongo pygmaeus (Orangutan) PSA1_PONAB - Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1	258.0	[0..1]	[259..1]
PSA1_MACFA - Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1	258.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNQYDGDV TVWSPQGRLH QVEYAVEAMK QGSATVGIKS ETHAVIVALK RAQNDLSSHQ  60
   61 KKVYEIDTHA GVSIAGLLSD GRILARYLQT ECSSWRWDYK QAVPIKKLAE SMQLKLQANT 120
  121 QYYGRRPFGV GILIAGYDKD GAHIIQTDPS AEVVSMHGTS IGARSQSART YLERNVDNFE 180
  181 KSTPEQLIVH ALLALRDTLP AEENLNAQNT SIGIVGKDSP FSLLEDAQVA VHLNQVSTHP 240
  241 RTTGGAAAAA APGGAEPMQM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.30103
Match:	1iruF
Description:	Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
endopeptidase activity	6.91642761177919	bayes_pls_golite062009
peptidase activity	6.84511694091156	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	6.5973571808298	bayes_pls_golite062009
hydrolase activity	4.47652590304822	bayes_pls_golite062009
threonine-type endopeptidase activity	2.98214579292788	bayes_pls_golite062009
threonine-type peptidase activity	2.98214579292788	bayes_pls_golite062009
binding	1.75265921676176	bayes_pls_golite062009
nucleic acid binding	1.39216781236247	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: