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View Structure Prediction Details

Protein: lact-9
Organism: Caenorhabditis elegans
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-9.

Description E-value Query
Range
Subject
Range
RPA1608 - RPA1608 Beta-lactamase 1787022:1788302 forward MW:47784
298.0 [0..24] [407..26]

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Predicted Domain #1
Region A:
Residues: [1-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWYTSCPKM LLGATAVAVP LGATVFRRES EKSENLLKIK KAKELVETTM AIQGIPGLSI  60
   61 AVSLDGKMVW KSGFGYANLE SFAKCTGDSV MRIASISKPI TATLAAQCVE NGTLDLDEDI 120
  121 RKYLPEFPAK KFKNEDVKIT MRQLLSHSAG IRHYATEKKK SETHEDPSNN NTETPEFLSN 180
  181 KPYNSSLDAL AIFKNDDLVE KPGSKFSYTT YGLTLAGAVL EKCSGKTYRQ LANQLFSDLG 240
  241 MRNTQLDTKE KIVPGRASYY QRNSKNILEN CPEVDCSNKF AGGGIISNTT DLLIIANAIL 300
  301 HSILSDSKNC LLQRETIRKF LEKQVPVDSK TSTGLGWFLV DGKDLKSIDG NISNSSFFYH 360
  361 TGAAVGASSV LLVNTSSGVC VAILCNLQNT TVLKLGRDIG DLFHGEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.09691
Match: 1c3bA
Description: AMPC beta-Lactamase, class C
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
serine-type D-Ala-D-Ala carboxypeptidase activity 3.37745387761459 bayes_pls_golite062009
penicillin binding 3.16077730467133 bayes_pls_golite062009
serine-type carboxypeptidase activity 3.02516915958448 bayes_pls_golite062009
serine-type exopeptidase activity 2.98959517344587 bayes_pls_golite062009
peptidase activity 2.83039919794123 bayes_pls_golite062009
hydrolase activity 2.49793880633218 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.44010191138805 bayes_pls_golite062009
carboxypeptidase activity 2.34154596924818 bayes_pls_golite062009
catalytic activity 2.2253600206851 bayes_pls_golite062009
serine-type peptidase activity 2.06335522739332 bayes_pls_golite062009
serine hydrolase activity 2.05686596429459 bayes_pls_golite062009
drug binding 2.00354593744547 bayes_pls_golite062009
exopeptidase activity 1.47021212834188 bayes_pls_golite062009

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