| Protein: | lmn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 566 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lmn-1.
| Description | E-value | Query Range |
Subject Range |
|
|
333.0 | [0..19] | [553..441] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MSSRKGTRSS RIVTLERSAN SSLSNNGGGD DSFGSTLLET SRLQEKDHLT SLNSRLATYI 60
61 DKVRQLEQEN NRLQVQIRDI EVV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [84-136] |
1 11 21 31 41 51
| | | | | |
1 EKKEKSNLAD RFEAEKARLR RALDSAQDEL AKYRIEYDAA KVEVKKLKPQ VEK
|
| Detection Method: | |
| Confidence: | 9.09691 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [137-480] |
1 11 21 31 41 51
| | | | | |
1 LERELAGAEE QALHAQSIAD QSQAKQKTLQ ARNDKLVVEN DDLKKQNITL RDTVEGLKKA 60
61 VEDETLLRTA ANNKIKALEE DLAFALQQHK GELEEVRHKR QVDMTTYAKQ INDEYQSKLQ 120
121 DQIEEMRAQF KNNLHQNKTA FEDAYKNKLN AARERQEEAV SEAIHLRARV RDLETSSSGN 180
181 ASLIERLRSE LDTLKRSFQE KLDDKDARIA ELNQEIERMM SEFHDLLDVK IQLDAELKTY 240
241 QALLEGEEER LNLTQEAPQN TSVHHVSFSS GGASAQRGVK RRRVVDVNGE DQDIDYLNRR 300
301 SKLNKETVGP VGIDEVDEEG KWVRVANNSE EEQSIGGYKL VVKA
|
| Detection Method: | |
| Confidence: | 16.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [481-566] |
1 11 21 31 41 51
| | | | | |
1 GNKEASFQFS SRMKLAPHAS ATVWSADAGA VHHPPEVYVM KKQQWPIGDN PSARLEDSEG 60
61 DTVSSITVEF SESSDPSDPA DRCSIM
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1ivtA |
| Description: | Lamin A/C globular tail domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 2.40638781086824 | bayes_pls_golite062009 |
| binding | 2.29024114419453 | bayes_pls_golite062009 |
| protein binding | 2.1850626714936 | bayes_pls_golite062009 |
