| Protein: | cav-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 351 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cav-2.
| Description | E-value | Query Range |
Subject Range |
|
|
564.0 | [0..1] | [351..1] |
|
Region A: Residues: [1-220] |
1 11 21 31 41 51
| | | | | |
1 MTRQNTSESD NTQRPPIPQY DTVDDIDELT DAMDKEDHHH HHHHHEHHHQ HQGIAQYDTV 60
61 EEVETLETVH HRTSLNQEVP TPQRRSHPQY DNLDDIDDQE YITEVEVKSN RGSTLTTRPH 120
121 VTIKQDEIED IGERQVTVIE IASQKGSTKR VAPRKDYAPS IPLPEHPAQQ SAPPTQQSRP 180
181 QTTSHKPPNP EMEFDIGVKN IAPVLIHKMN MDDRDPKDSA
|
| Detection Method: |  |
| Confidence: | 0.966 |
| Match: | 2apoA |
| Description: | Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.752067860167757 | bayes_pls_golite062009 |
| pseudouridine synthase activity | 0.238084857118933 | bayes_pls_golite062009 |
| catalytic activity | 0.194390467213858 | bayes_pls_golite062009 |
| protein binding | 0.0955723077565195 | bayes_pls_golite062009 |
|
Region A: Residues: [221-351] |
1 11 21 31 41 51
| | | | | |
1 QYLNTSFFEV FNEPSEQYHS IACVWTLSFK IFEIVRIYSY KILTLIFGLI IAFLGGILFA 60
61 LFAFLNIWIF RPILILTRMA FAQIVLIWPM FLIYIVRPFF YSVGAIFSTA RLHTSRGEQV 120
121 VEVWEKHIHH V
|
| Detection Method: | |
| Confidence: | 40.187087 |
| Match: | PF01146.8 |
| Description: | No description for PF01146.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
