YRC Public Data Repository - Protein Structure Prediction

Protein:	ubq-2
Organism:	Caenorhabditis elegans
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubq-2.

Description	E-value	Query Range	Subject Range
gi\|73986078 - gi\|73986078\|ref\|XP_533870.2\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusion p...	212.0	[0..1]	[128..59]
gi\|114676157 - gi\|114676157\|ref\|XP_001135183.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	211.0	[0..1]	[128..94]
gi\|109124042 - gi\|109124042\|ref\|XP_001115463.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	206.0	[0..1]	[128..49]
gi\|70990606, gi\|... - gi\|70990606\|ref\|XP_750152.1\| ubiquitin (UbiA), putative [Aspergillus fumigatus Af293], gi\|66847784\|g...	205.0	[0..1]	[128..97]
gi\|114193911, gi... - gi\|115390965\|ref\|XP_001212987.1\| 60S ribosomal protein L40 [Aspergillus terreus NIH2624], gi\|1141939...	203.0	[0..4]	[128..298]
gi\|13569612 - gi\|13569612\|gb\|AAK31162.1\| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]	201.0	[0..1]	[128..14]
gi\|15187109 - gi\|15187109\|gb\|AAK91296.1\|AF395864_1 ubiquitin [Branchiostoma belcheri]	197.0	[0..1]	[128..1]
gi\|91080141 - gi\|91080141\|ref\|XP_968519.1\| PREDICTED: similar to ribosomal protein Ubq/L40e [Tribolium castaneum]	196.0	[0..1]	[128..1]
gi\|194117886, gi... - gi\|195160144\|ref\|XP_002020936.1\| GL13989 [Drosophila persimilis], gi\|194117886\|gb\|EDW39929.1\| GL1398... gi\|195114034, gi... - gi\|195114034\|ref\|XP_002001572.1\| GI16482 [Drosophila mojavensis], gi\|193912147\|gb\|EDW11014.1\| GI1648... gi\|125986696\|ref... - GA15543-PA [Drosophila pseudoobscura], GA15543 [Drosophila pseudoobscura pseudoobscura] gi\|195437464, gi... - gi\|195437464\|ref\|XP_002066660.1\| GK24609 [Drosophila willistoni], gi\|194162745\|gb\|EDW77646.1\| GK2460... gi\|195401058, gi... - gi\|195401058\|ref\|XP_002059131.1\| GJ16220 [Drosophila virilis], gi\|194156005\|gb\|EDW71189.1\| GJ16220 [... gi\|208657505 - gi\|208657505\|gb\|ACI30049.1\| ubiquitin/60S ribosomal protein L40 fusion [Anopheles darlingi] gi\|16074119 - gi\|16074119\|emb\|CAC94469.1\| anopheles stephensi ubiquitin [Anopheles stephensi] gi\|114864908 - gi\|114864908\|gb\|ABI83782.1\| ubiquitin [Anopheles funestus] gi\|194201766, gi... - gi\|195550845\|ref\|XP_002076117.1\| GD12014 [Drosophila simulans], gi\|194201766\|gb\|EDX15342.1\| GD12014 ... gi\|157113624, gi... - gi\|16118870\|gb\|AAL14636.1\|AF418984_1 ubiquitin-52-amino-acid fusion protein [Aedes aegypti], gi\|1571... gi\|125986696, gi... - gi\|54645438\|gb\|EAL34177.1\| GA15543 [Drosophila pseudoobscura pseudoobscura], gi\|125986696\|ref\|XP_001... gi\|220947932, gi... - gi\|220957162\|gb\|ACL91124.1\| RpL40-PA [synthetic construct], gi\|220947932\|gb\|ACL86509.1\| RpL40-PA [sy... gi\|55237763, gi\|... - gi\|58390190\|ref\|XP_317555.2\| AGAP007927-PA [Anopheles gambiae str. PEST], gi\|55237763\|gb\|EAA12215.2\|... gi\|38047797, gi\|... - gi\|38048585\|gb\|AAR10195.1\| similar to Drosophila melanogaster RpL40 [Drosophila yakuba], gi\|38047797... gi\|190615295, gi... - gi\|194758697\|ref\|XP_001961598.1\| GF15052 [Drosophila ananassae], gi\|190615295\|gb\|EDV30819.1\| GF15052... gi\|170032305, gi... - gi\|170032305\|ref\|XP_001844022.1\| anopheles stephensi ubiquitin [Culex quinquefasciatus], gi\|16787230... AGAP007927-PA - RpL40: 60S ribosomal protein L40\|protein_coding\|3R:2920433:2920903:1\|gene:AGAP007927 gi\|195035911, gi... - gi\|195035911\|ref\|XP_001989415.1\| GH10063 [Drosophila grimshawi], gi\|193905415\|gb\|EDW04282.1\| GH10063... gi\|194855956, gi... - gi\|194855956\|ref\|XP_001968650.1\| GG24988 [Drosophila erecta], gi\|190660517\|gb\|EDV57709.1\| GG24988 [D... RpL40-PA, FBpp03... - The gene Ribosomal protein L40 is referred to in FlyBase by the symbol Dmel\RpL40 (CG2960, FBgn00039... gi\|56417572 - gi\|56417572\|gb\|AAV90727.1\| 60S ribosomal protein L40 [Aedes albopictus]	196.0	[0..1]	[128..1]
gi\|185134441, gi... - gi\|6633991\|dbj\|BAA88568.1\| ubiquitin [Oncorhynchus mykiss], gi\|185134441\|ref\|NP_001117666.1\| ubiquit... gi\|197632607, gi... - gi\|223672341\|gb\|ACN12352.1\| Ubiquitin [Salmo salar], gi\|223646494\|gb\|ACN10005.1\| Ubiquitin [Salmo sa... gi\|113707410 - gi\|113707410\|gb\|ABI36601.1\| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]	196.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVEAS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	2ojrA
Description:	No description for 2ojrA was found.

Predicted Domain #2

Region A:
Residues: [65-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLHLVLRLR GGIIEPSLRQ LAQKYNCDKQ ICRKCYARLP PRASNCRKKK CGHSSELRIK  60
   61 KKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.92
Match:	2ayjA
Description:	No description for 2ayjA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.67761199764219	bayes_pls_golite062009
structural molecule activity	9.13063837111868	bayes_pls_golite062009
binding	1.81525505623128	bayes_pls_golite062009
protein binding	1.39181618480952	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: