YRC Public Data Repository - Protein Structure Prediction

Protein:	ces-2
Organism:	Caenorhabditis elegans
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ces-2.

Description	E-value	Query Range	Subject Range
gi\|114581857 - gi\|114581857\|ref\|XP_001152057.1\| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]	114.0	[0..6]	[194..229]
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	101.0	[0..7]	[180..309]
gi\|74196206 - gi\|74196206\|dbj\|BAE33010.1\| unnamed protein product [Mus musculus]	98.0	[0..3]	[194..136]
FOS_TETFL - Proto-oncogene c-Fos OS=Tetraodon fluviatilis GN=fos PE=3 SV=1	98.0	[0..13]	[210..25]
gi\|38197370, gi\|... - gi\|40254775\|ref\|NP_068608.2\| jun B proto-oncogene [Rattus norvegicus], gi\|38197370\|gb\|AAH61862.1\| Ju...	98.0	[0..3]	[194..136]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFHRALSAL FTNQAAVQPL LGSLGFPFND GTSILTTALA AQSGGKKLDT PLGILPFDSL  60
   61 PTTNLLTPTK KIKLEDELCA SPVSSRSSTV SSSHFSSPQR SP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRKMSVPIPE EKKDSAYFER RRKNNDAAKR SRDARRQKEE QIASKAHALE RENMQLRGKV  60
   61 SSLEQEAAQL RFLLFSKISP ANSEVSCESN DSTETNDSND SKSDSTIEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits