YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-16.48
Organism:	Caenorhabditis elegans
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-16.48.

Description	E-value	Query Range	Subject Range
gi\|187024433, gi... - gi\|39594516\|emb\|CAE72094.1\| Hypothetical protein CBG19185 [Caenorhabditis briggsae], gi\|187024433\|em... gi\|157764424 - gi\|157764424\|ref\|XP_001674555.1\| Hypothetical protein CBG19185 [Caenorhabditis briggsae AF16]	135.0	[0..1]	[143..1]
hsp-16.41 - heat shock protein status:Confirmed UniProt:P06581 protein_id:AAF60616.1	133.0	[0..1]	[143..1]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	124.0	[0..3]	[138..8]
CRYAA - crystallin, alpha A gi\|114684552 - gi\|114684552\|ref\|XP_514927.2\| PREDICTED: crystallin, alpha A [Pan troglodytes]	124.0	[0..3]	[142..21]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMLRSPFSD SNVLDHFLDE ITGSVQFPYW RNADHNSFNF SDNIGEIVND ESKFSVQLDV  60
   61 SHFKPEDLKI ELDGRELKIE GIQEKKSEHG YSKRSFSKMI LLPEDVDLTS VKSAISNEGK 120
  121 LQIEAPKKTN SSRSIPINFV AKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3360635562029	bayes_pls_golite062009
protein binding	0.743263427072441	bayes_pls_golite062009
unfolded protein binding	0.540503020005284	bayes_pls_golite062009
catalytic activity	0.260308151913118	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: