YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE13169
Organism: Caenorhabditis elegans
Length: 588 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13169.

Description E-value Query
Range
Subject
Range
gi|126632487, gi... - gi|94733021|emb|CAK11377.1| novel protein similar to vertebrate GTP binding protein 2 (GTPBP2) [Dani...
430.0 [0..1] [588..1]

Back

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFMISHFCD EQNHQPLYKT RRQSISDSKN GPTLLSSSLP TNDECSDSDT ENRLPPETEL  60
   61 GNIEYKAKLV NPTTSRIQHL ITQMKWRLRE GQGEAIYEIG VEDGGIMSGL TDEELNDSLR 120
  121 TLRTMAQALG ASMVILTEKD VTVKGSNSRR TVVEVLVRKV PES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.09691
Match: 2hjgA
Description: No description for 2hjgA was found.

Predicted Domain #2
Region A:
Residues: [164-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQFIEVRLAV VGGCDVGKST LCGVLTQGCL DDGNGKARIG IFRFPHEVRT GKTSSVCNDV  60
   61 IGFDNRGKLV NYAQNSLEEM VEKSSKLVTL IDLAGDAKYQ KTTIHGLTGY TPHFACLVVA 120
  121 ADRGITWATR EHLGLIAALN IPMFVLITKM DLVDRQGLKK IIKDVSNLVA KAGMTAREKR 180
  181 VKTKRDAVKA AQELCVGSIV PVLAVSSVSG EGFRCLRTLL NCLSTAGTAE SRIQLVGLPA 240
  241 FFTIEELYNV PHVGQVVGGM LSEGQLHEGA DVLVGPMKDG TFEKITVGSI RRSRQAVGCV 300
  301 NPGEAASISL NLPDGVSLRR GMVLAEIDHQ PPVCYEFTAN LLLLCHSTKY ICEGFQATVF 360
  361 IGSVCTTAII THIDDADCIR PGKWAVVKMC FAYQPEVIRE GSPIILRQGK TKGMGEVLKV 420
  421 FPCTQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1f60A
Description: Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.36550713198424 bayes_pls_golite062009
catalytic activity 0.234613562021476 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.166100211611062 bayes_pls_golite062009
pyrophosphatase activity 0.159702441149605 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.149170905385965 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.147838751017739 bayes_pls_golite062009
hydrolase activity 0.0436758932827116 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle