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View Structure Prediction Details

Protein: zen-4
Organism: Caenorhabditis elegans
Length: 775 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zen-4.

Description E-value Query
Range
Subject
Range
zen-4 - status:Confirmed UniProt:Q8MQ04 protein_id:AAM97993.1
377.0 [0..1] [775..1]

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Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKRGITP SRDQVRRKKL SIEETDSIEV VCRLCPYTGS TPSLIAIDEG SIQTVLPPAQ  60
   61 FRRENAPQVE KVFRFGRVFS ENDGQATVFE RTSVDLILNL LKGQNSLLFT YGVTGSGKTY 120
  121 TMTGKPTETG TGLLPRTLDV IFNSINNRVE KCIFYPSALN TFEIRATLDA HLKRHQMAAD 180
  181 RLSTSREITD RYCEAIKLSG YNDDMVCSVF VTYVEIYNNY CYDLLEDARN GVLTKREIRH 240
  241 DRQQQMYVDG AKDVEVSSSE EALEVFCLGE ERRRVSSTLL NKDSSRSHSV FTIKLVMAPR 300
  301 AYETKSVYPT MDSSQIIVSQ LCLVDLAGSE RAKRTQNVGE RLAEANSINQ SLMTLRQCIE 360
  361 VLRRNQKSSS QNLEQVPYRQ SKLTHLFKNY LEGNGKIRMV ICVNPKPDDY DENMSALAFA 420
  421 EESQTIEVKK QVERM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.221849
Match: 1i6iA
Description: Kinesin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [436-775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSERIPHSFF TQWNSELDGS VRMEDDGSRE IPCPPTFCLT DCNDKDTVDS MYKYARKLSS  60
   61 LQNSSEEGPS STLLTMIRQY MMEADYQRVE IARLKDSLND KDEEIKKLRG FCSRYKRENA 120
  121 SMKERIASCE QGEQENALVM EKLMEQKMED RKIIQSQKKA MRNVRGIIDN PSPSVASLRS 180
  181 RFDQENVAHP TAPIQTPPPP YQTPGRAPVF KKRLEATTST TVMSGSSSGG SGQQGYVNPK 240
  241 YQRRSKSASR LLDHQPLHRV PTGTVLQSRT PANAIRTTKP EMHQLNKSGE YRLTHQEVDD 300
  301 EGNISTNIVK GNVIPTVSGG TAVFFNDIER LTHESPSTRK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle